Alignments for a candidate for leuD in Chlorobaculum parvum NCIB 8327

Align 2-(omega-methylthio)alkylmalate dehydratase (subunit 1/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_012501882.1 CPAR_RS03215 3-isopropylmalate dehydratase small subunit

Query= BRENDA::Q9ZW85
         (251 letters)



>NCBI__GCF_000020505.1:WP_012501882.1
          Length = 191

 Score =  163 bits (412), Expect = 3e-45
 Identities = 88/185 (47%), Positives = 118/185 (63%), Gaps = 8/185 (4%)

Query: 72  GLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSYALVGLPASY------KERFVQPG 125
           G  YV+G NIDTDQIIPAE L    S+PEE +  G YAL G+P         K  FV+ G
Sbjct: 7   GKAYVLGKNIDTDQIIPAEHLVYSLSDPEEVKLYGKYALSGVPLEQAGLPEGKIPFVEEG 66

Query: 126 EMKTKYSIIIGGENFGCGSSREHAPVCLGAAGAKAVVAQSYARIFFRNSVATGEVYPLDS 185
           +  + YS IIGG NFGCGSSREHAP  L  AGAKA++A+SYARIF+RN V  G V P ++
Sbjct: 67  QFTSPYSFIIGGPNFGCGSSREHAPFALKVAGAKAIIAESYARIFYRNCVDGGFVIPYET 126

Query: 186 EVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAGPVIDAGGIFAYARKAGM 245
             ++     TGD  ++++ +  + L N T    Y+L+P+GD   ++ AGGIF YARK  +
Sbjct: 127 TQQLNKTVMTGDELSLDMEK--NTLTNLTQNITYELRPLGDVVNIVQAGGIFEYARKNDL 184

Query: 246 IPSAA 250
           + S++
Sbjct: 185 MASSS 189


Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 156
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 191
Length adjustment: 22
Effective length of query: 229
Effective length of database: 169
Effective search space:    38701
Effective search space used:    38701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)

Align candidate WP_012501882.1 CPAR_RS03215 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR02087 (3-isopropylmalate dehydratase, small subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.14522.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14522.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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