Alignments for a candidate for argB in Chlorobaculum parvum NCIB 8327

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_012502230.1 CPAR_RS05045 acetylglutamate kinase

Query= BRENDA::Q9X2A4
         (282 letters)



>NCBI__GCF_000020505.1:WP_012502230.1
          Length = 301

 Score =  258 bits (659), Expect = 1e-73
 Identities = 129/269 (47%), Positives = 184/269 (68%)

Query: 7   NVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAI 66
           +VL+EALPYI++F GKTFVIK+GG+AMK E  K  F +++ LL+  GIK +IVHGGG AI
Sbjct: 21  HVLVEALPYIRQFEGKTFVIKYGGAAMKDEVLKNIFAENVTLLRKVGIKVVIVHGGGDAI 80

Query: 67  SQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSK 126
           ++    +G+E  F +G RVTD +T+ +V+M L GK+N++IV  +N  GG AVG+ G D+ 
Sbjct: 81  TKTSDKMGLETTFVHGKRVTDLETINVVQMTLAGKVNQDIVQLINEDGGNAVGVSGLDAD 140

Query: 127 LIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAA 186
           +I A        +G VG+V ++N   +  L +   IPVIAP+G   + + YNINAD AAA
Sbjct: 141 MIRAVPAANAETLGLVGQVAEINTRYIDLLTDAGLIPVIAPIGYDMESNVYNINADDAAA 200

Query: 187 EIAKSLMAEKLILLTDVDGVLKDGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVR 246
            IA +L AEKLI ++DV+GV    +++ T+   +A E I  G +TGGMIPKV  A   + 
Sbjct: 201 AIAVALKAEKLIYISDVEGVRVGDRILKTICKADAAEFIERGVITGGMIPKVVSAYQTLD 260

Query: 247 GGVGAVHIINGGLEHAILLEIFSRKGIGT 275
           GGVG VH+I+G + HA+LLE+F+ +G+GT
Sbjct: 261 GGVGKVHLIDGQITHALLLEVFTNEGVGT 289


Lambda     K      H
   0.318    0.140    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 283
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 301
Length adjustment: 26
Effective length of query: 256
Effective length of database: 275
Effective search space:    70400
Effective search space used:    70400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_012502230.1 CPAR_RS05045 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.7062.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7062.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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