Alignments for a candidate for ilvE in Chlorobaculum parvum NCIB 8327

Align branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.42) (characterized)
to candidate WP_012502762.1 CPAR_RS07765 branched-chain amino acid transaminase

Query= metacyc::MONOMER-11914
         (306 letters)



>NCBI__GCF_000020505.1:WP_012502762.1
          Length = 303

 Score =  373 bits (958), Expect = e-108
 Identities = 173/299 (57%), Positives = 229/299 (76%), Gaps = 1/299 (0%)

Query: 8   KIWLNGEMVEWEEATVHVLSHVVHYGSSVFEGIRCYRNSKGSAIFRLREHVKRLFDSAKI 67
           KIW+NGE+V+W +A +HV+SHV HYGSS FEGIRCY  +KGSAI  L EHV+RL++S+KI
Sbjct: 6   KIWMNGELVDWNDAKIHVMSHVAHYGSSTFEGIRCYDTAKGSAILFLDEHVRRLWESSKI 65

Query: 68  YRMDIPYTQEQICDAIVETVRENGLEECYIRPVVFRGYGEMGVHPVNCPVDVAVAAWEWG 127
           YR++IPY++ +I DAI+ T++ NG + CYIRP+V+RG G +GV+P    ++VA+A WEWG
Sbjct: 66  YRIEIPYSETEIKDAIIATIKANGHKACYIRPLVYRGQGALGVNPHRASIEVAIATWEWG 125

Query: 128 AYLGAEALEVGVDAGVSTWRRMAPNTMPNMAKAGGNYLNSQLAKMEAVRHGYDEAIMLDY 187
           +YLG + LE GVD  VS+W R+APNT+P+ AKAGGNY+NSQL KMEA+  GY E + LD 
Sbjct: 126 SYLGEDVLETGVDVKVSSWHRLAPNTLPSWAKAGGNYMNSQLIKMEAISDGYAEGLALDQ 185

Query: 188 HGYISEGSGENIFLVSEGEIYTPPVSSSLLRGITRDSVIKIARTEGVTVHEEPITREMLY 247
           +GY++EGSGENIF+V    +YTP  + S+L G TR +V++IA+  G  V E  I RE LY
Sbjct: 186 NGYVAEGSGENIFVVRHNVLYTPFAAQSILPGFTRHAVMEIAKKLGYEVRETLIPRESLY 245

Query: 248 IADEAFFTGTAAEITPIRSVDGIEIGAGRRGPVTKLLQDEFFRIIRAETEDSFGWLTYI 306
           IADE F TGTAAEITP+RSVD   +G  +RGPVT+ LQ E+ +I+ +  ED F WLT+I
Sbjct: 246 IADEIFLTGTAAEITPVRSVDKYPVGQEKRGPVTEALQHEYLKIVHS-GEDPFNWLTFI 303


Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 342
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 303
Length adjustment: 27
Effective length of query: 279
Effective length of database: 276
Effective search space:    77004
Effective search space used:    77004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_012502762.1 CPAR_RS07765 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.1735.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1735.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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