Align aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (characterized)
to candidate WP_012504858.1 PAES_RS01305 bifunctional aspartate kinase/homoserine dehydrogenase I
Query= reanno::Cola:Echvi_2000
(815 letters)
>NCBI__GCF_000020625.1:WP_012504858.1
Length = 819
Score = 666 bits (1719), Expect = 0.0
Identities = 349/820 (42%), Positives = 517/820 (63%), Gaps = 10/820 (1%)
Query: 1 MKIIKFGGSSIANYENIQKVFSIIEQKSEKEAFALVFSAFGGVTEQLLQCANIAQQSEES 60
M ++KFGG+SI N + I+ V +II +V SA VT+ LL A A +
Sbjct: 1 MNVLKFGGTSIENGKRIRNVLNIIRDAMHDGPVIVVVSAIRKVTDLLLDAALTACRGGGD 60
Query: 61 YHTILQELEKRHLEIVKKLVPVQQQSTALTFVKVRFNELGDLFHGIYLIKECSNRTMDYV 120
Y L ++E+ H +V+ L+ ++ ++ +ELGD+ HG+ L++E S ++ +
Sbjct: 61 YKEKLVDIERLHTALVEDLLTGEKAEDVQRYLCGVLSELGDVLHGVSLLRELSEKSSALI 120
Query: 121 LSFGERLSNFILAAGLQAKGIGTSYVDARDLVKTDDRFGHAKVNFKTTNKLIQDHFKSHD 180
+SFGER S +I+++ L +G+ SYVDAR ++ TD G A+V+ + + I++ + D
Sbjct: 121 MSFGERFSAYIISSYLSQEGVAASYVDARGMIVTDTSHGDARVDMEASALQIRERLNNAD 180
Query: 181 DIKVITGFIGSTEKGETTTVGRSGSDYTASIFAAALGAEQVEIWTDVSGVMTADPRLVYT 240
I V+TG+IGS G TT+GR GSDYTA+I + LGA +++IWTDV G +ADP+ V
Sbjct: 181 SIPVVTGYIGSAPDGTVTTLGRGGSDYTATIIGSVLGAGEIQIWTDVDGFFSADPKRVRD 240
Query: 241 AFTIPQLSYNEAMELSHFGAKVVFPATMQPAMKEDIPIYIKNTFKPDEAGTRISKDSGEG 300
A+ +P +SY EAMELSH GAKV+ P + PAMK IPI I+N+ P GTRI K S E
Sbjct: 241 AYALPFISYAEAMELSHAGAKVLHPYAVHPAMKAGIPITIRNSMNPGAPGTRIEKLSSEE 300
Query: 301 KI----IKGISSMDNISILNVQGPGLVEVVGVSQRFFGTLANNGINIILISQASSEHSIC 356
+ + G+SS+ +I +LN+ G G+V V G++ R F LA + INII ISQASSE SI
Sbjct: 301 AVSARPVTGLSSISDIVLLNISGSGMVGVPGIASRLFSCLARHMINIIFISQASSEQSIS 360
Query: 357 VAIASKDASRAKSVIEEEFRYEIQSGEMDEIQIVPDMAVIAVVGENMQHNPGASGRMFQA 416
+AI + AS+A+ +++EF E+ S +++ + + D+++IAVVG++M +PG S +F+
Sbjct: 361 LAINALQASKAQMALDDEFAVELGSRQIESLTVRQDISMIAVVGKSMSGHPGVSAHLFET 420
Query: 417 LGRNNVNVAAIAQGSSELNISAVITQADLQKALNALHEAFFLSDYKVLHLFLVGVGLIGK 476
LG+N +NV A+AQG++E+NIS VI D KALN +HE+FFLS KV H+F+ G G I
Sbjct: 421 LGKNGINVIAVAQGANEMNISFVIDSHDEDKALNCVHESFFLSRRKV-HVFIAGTGTISS 479
Query: 477 ALTKMIHQQLKNLQEENMLDIQIHGMANSRYMKFHEDGFDL---ATVGPPDENDEPMDMD 533
+L I + L LDI + GMAN+R M + +G DL + P E + +
Sbjct: 480 SLIGQIRDHHETLSVGKNLDIVVCGMANTRMMALNNEGIDLNDWQSALQPREGERTIG-- 537
Query: 534 KFIGTMTEMNFSNSVFVDCTASQDVADIYEQILDSKVGIVTPNKKANSGPLETYKKLKKL 593
++ + N N++FVDCTAS DVA Y ++L S + +VT NK +G + Y+ +
Sbjct: 538 DYLARIRSRNLHNTIFVDCTASADVAAAYPELLRSNISVVTANKLGMAGSWDLYETINDA 597
Query: 594 AGQRGVRFFYETNVAAGLPVINTLQDLMLSGDHVHRIEAVLSGSMNYIFSELEKGMPFSE 653
+F YETNV AGLP+INTL DL SGD + +IE VLSG+++YIF+EL KG FS
Sbjct: 598 LNSSNAKFLYETNVGAGLPIINTLNDLRNSGDKILKIEGVLSGTLSYIFNELRKGGAFSR 657
Query: 654 VVAQAKEKGYTEPDPRDDLSGMDVARKILILGREAGQDLHFEDVEIQSMVPEDCEDAASV 713
+V QA++ G+TEPDPR+DLSG D ARK LILGRE G +++ED++ +S+VP+ V
Sbjct: 658 IVRQARDAGFTEPDPREDLSGADFARKFLILGRELGFRINYEDIQCESLVPDHLMGQMPV 717
Query: 714 PEFFKKLQKHDGHFQQLLDEANAKGEKLRFMATLENGKAKVGLNSLDSEHPFFTLKGSDN 773
EF +KL D + + +A A+G + + + GKAK+ + L +P L G++N
Sbjct: 718 EEFLEKLACVDEEYDDMNRKAAAEGMTIAYAGEINGGKAKISVKMLPLSNPVAGLNGTEN 777
Query: 774 MILFTTERYNDFPMIVRGPGAGADVTAAGVFADIIRLGNY 813
M++FTT+RY D P++V+GPGAG +VTA GVFADI+R+ +Y
Sbjct: 778 MVVFTTDRYFDTPLVVKGPGAGGEVTAGGVFADILRIASY 817
Lambda K H
0.317 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1404
Number of extensions: 61
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 815
Length of database: 819
Length adjustment: 41
Effective length of query: 774
Effective length of database: 778
Effective search space: 602172
Effective search space used: 602172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Align candidate WP_012504858.1 PAES_RS01305 (bifunctional aspartate kinase/homoserine dehydrogenase I)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.24656.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24656.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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