Alignments for a candidate for dapF in Prosthecochloris aestuarii DSM 271

Align Diaminopimelate epimerase; DAP epimerase; EC 5.1.1.7; PLP-independent amino acid racemase (uncharacterized)
to candidate WP_012504867.1 PAES_RS01355 diaminopimelate epimerase

Query= curated2:Q8KAX9
         (257 letters)



>NCBI__GCF_000020625.1:WP_012504867.1
          Length = 264

 Score =  292 bits (748), Expect = 4e-84
 Identities = 143/257 (55%), Positives = 187/257 (72%), Gaps = 2/257 (0%)

Query: 1   MSGAGNDFIVIDNRQGLFNLTHEQVRAMCTRRTGIGADGLILLETSETADFRMNYHNADG 60
           MSGAGNDFIV DN     +L+ + +R++CTRRTGIGADGLIL+E S   DF M Y+NADG
Sbjct: 10  MSGAGNDFIVFDNMHKDIHLSADNIRSLCTRRTGIGADGLILIEPSARFDFAMKYYNADG 69

Query: 61  FPGTMCGNGGRCAVWFAHLIGIRPTGKHYRFEAGPSTYEAEVTGEESVRLHMLPPSDFRD 120
            PG+MCGNGGRCAV+FA  IG    G    FEA  + Y+A V   E++RL M+ P DFRD
Sbjct: 70  LPGSMCGNGGRCAVYFAWTIGA--CGTTTAFEANGNRYDAWVCDNEAIRLKMILPHDFRD 127

Query: 121 GLQAGAWNCHFVDTGSPHAIAYVNNLDQLDVLTEGGNIRHNKELFPDGTNVNFLEITAPD 180
              +   +C+FV+TGSPH I + + LD  DV + G  IR++ +LFP+GTNVNFL++T+P+
Sbjct: 128 EFGSNGLSCNFVNTGSPHTIIFTDELDTFDVESTGRLIRNDSKLFPEGTNVNFLQVTSPE 187

Query: 181 ALSIRTFERGVEDETLACGTGTVAAALMSFRLGKVTSSLVRVKVKSGETLMVGFNEMMDE 240
           +L +RT+ERGVE ETLACGTG VAAALMS++LGK+ S  V V V+SG+ L + F+E M +
Sbjct: 188 SLKVRTYERGVEAETLACGTGAVAAALMSYKLGKIASRSVSVSVRSGDILTIDFSEDMQD 247

Query: 241 IYLEGPARAVYRGTITL 257
           +YL GPA  VY G+I +
Sbjct: 248 VYLSGPATIVYTGSIQM 264


Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 274
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 264
Length adjustment: 25
Effective length of query: 232
Effective length of database: 239
Effective search space:    55448
Effective search space used:    55448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_012504867.1 PAES_RS01355 (diaminopimelate epimerase)
to HMM TIGR00652 (dapF: diaminopimelate epimerase (EC 5.1.1.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.25148.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25148.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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