Alignments for a candidate for leuB in Prosthecochloris aestuarii DSM 271

Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate WP_012505324.1 PAES_RS03710 3-isopropylmalate dehydrogenase

Query= SwissProt::Q56268
         (358 letters)



>NCBI__GCF_000020625.1:WP_012505324.1
          Length = 353

 Score =  365 bits (936), Expect = e-105
 Identities = 183/351 (52%), Positives = 247/351 (70%), Gaps = 4/351 (1%)

Query: 1   MKKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQ 60
           M KI    GDGIGPE+VA+A +V++ + +   L +   E L GGA+ D   + L   +L+
Sbjct: 1   MFKIVSIPGDGIGPEVVASAIRVINTLARQHGLEITIEEHLFGGASYDVHGEMLTQETLE 60

Query: 61  LAMAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLR 120
                DAV+LGAVGGP+W+  P  K+PE  LL +RK L L+AN RPA+++  L++AS L+
Sbjct: 61  ACRKCDAVLLGAVGGPKWENLPHEKKPEAALLGIRKELGLFANFRPAKVYDALVNASSLK 120

Query: 121 PELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQG 180
           PE++   D +V+RELTG IYFG+PRG +      RG+NTMVY+  E+ RIA +AF AA  
Sbjct: 121 PEILAGTDFMVIRELTGGIYFGEPRGYD----DTRGWNTMVYEHYEVERIARLAFDAAMK 176

Query: 181 RRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 240
           R+KQL S+DKANVLE+++ WR +V EV +D+P+V L  MYVDNAAMQ++R P QFDV++T
Sbjct: 177 RKKQLVSIDKANVLESSQFWRNIVHEVHKDFPEVELIDMYVDNAAMQIVRDPKQFDVIVT 236

Query: 241 GNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVA 300
            N+FGDILSD +  +TGS+GMLPSAS+G   A+YEPIHGSAPDIAGQ+KANP+ATI S A
Sbjct: 237 KNLFGDILSDISGMITGSLGMLPSASIGSSHALYEPIHGSAPDIAGQNKANPIATIASAA 296

Query: 301 MMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVV 351
           MM  HS   +  A  + +A+++ L  G RTADIA P   ++ T  M  A+V
Sbjct: 297 MMFEHSFCMKNVADEIYSAIEKTLASGFRTADIANPEDTIVSTTEMTDAIV 347


Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 351
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 353
Length adjustment: 29
Effective length of query: 329
Effective length of database: 324
Effective search space:   106596
Effective search space used:   106596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_012505324.1 PAES_RS03710 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.26097.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26097.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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