Alignments for a candidate for ilvC in Prosthecochloris aestuarii DSM 271

Align Ketol-acid reductoisomerase (NADP(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; EC 1.1.1.86 (characterized)
to candidate WP_012505325.1 PAES_RS03715 ketol-acid reductoisomerase

Query= SwissProt::Q9HVA2
         (338 letters)



>NCBI__GCF_000020625.1:WP_012505325.1
          Length = 330

 Score =  409 bits (1052), Expect = e-119
 Identities = 194/327 (59%), Positives = 251/327 (76%)

Query: 1   MRVFYDKDCDLSIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG 60
           M V+Y++D DL  +QGK +A++GYGSQGHAHA NLK+SG++V VGLR+ S++ AKA   G
Sbjct: 1   MNVYYEQDADLKHLQGKNIAVLGYGSQGHAHALNLKESGLNVCVGLRTDSSSCAKARQAG 60

Query: 61  LKVADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVPRA 120
           L+V  +  AV  AD++MIL PD++Q  +Y+ EI PNL+ G TLAFAHGF+IHY Q+VP  
Sbjct: 61  LEVNTIADAVKWADIIMILLPDQYQKAIYETEIAPNLETGNTLAFAHGFNIHYKQIVPPE 120

Query: 121 DLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGIIE 180
            ++VIMIAPK+PGH VR  F +G G+P LIA++QD +GNAK  AL++A G+GG + G+IE
Sbjct: 121 TVNVIMIAPKSPGHLVRRTFTEGNGVPCLIAVHQDYTGNAKEQALAWAKGLGGAKAGVIE 180

Query: 181 TTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYE 240
           TT KDETETDLFGEQAVLCGG  EL+KAGFETLVEAGY  E+AYFECLHELKLIVDL YE
Sbjct: 181 TTIKDETETDLFGEQAVLCGGSAELIKAGFETLVEAGYPEELAYFECLHELKLIVDLYYE 240

Query: 241 GGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPS 300
           GG++ MNYS+S+ AEYG    GP +I    +A M+  L+ +QDG +AK FI E  + Y +
Sbjct: 241 GGLSRMNYSVSDTAEYGGMTRGPRLITPAVKAEMKKILEEVQDGRFAKEFIDECNSGYKN 300

Query: 301 MTAYRRNNAAHPIEQIGEKLRAMMPWI 327
           +T+ R +N  HPIE++G KLR MM W+
Sbjct: 301 LTSLRESNTNHPIEKVGAKLRNMMSWL 327


Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 381
Number of extensions: 16
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 330
Length adjustment: 28
Effective length of query: 310
Effective length of database: 302
Effective search space:    93620
Effective search space used:    93620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_012505325.1 PAES_RS03715 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.21883.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21883.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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