Alignments for a candidate for argI in Prosthecochloris aestuarii DSM 271

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_012505645.1 PAES_RS05395 ornithine carbamoyltransferase

Query= metacyc::AT1G75330-MONOMER
         (375 letters)



>NCBI__GCF_000020625.1:WP_012505645.1
          Length = 344

 Score =  290 bits (741), Expect = 5e-83
 Identities = 148/323 (45%), Positives = 212/323 (65%), Gaps = 8/323 (2%)

Query: 55  SSVTSPSSPSDVKGKSDLKDFLAIDDFDTATIKTILDKASEVKA--LLKSGERNYLPFKG 112
           SS+  P+  + VK +    DFL     D   I  + D ++ +KA  L ++    Y P +G
Sbjct: 3   SSMPHPTKETIVKKR----DFLGFQPLDAGKIIELFDFSAFIKAKRLDRTAASKYKPIEG 58

Query: 113 KSMSMIFAKPSMRTRVSFETGFFLLGGHALYLGPNDIQMGKREETRDVARVLSRYNDIIM 172
           K+++MIF KPS+RTRVSFE G   LGG+A+ L    I +  RE   D+A++LSRYND I+
Sbjct: 59  KTVAMIFNKPSLRTRVSFELGIHELGGYAVNLDGKSIGVNSREAVEDIAQLLSRYNDAIV 118

Query: 173 ARVFAHQDILDLANYSSVPVVNGLTDHNHPCQIMADALTMIEHIGQVEGTKVVYVGDGNN 232
           AR+  H  I DLA  +++PV+N LTD +HPCQI+ADA T+ E     EG K+V+VGDGNN
Sbjct: 119 ARLHEHSVIEDLAANATIPVINALTDLSHPCQILADAFTLYEKGLWKEGVKIVFVGDGNN 178

Query: 233 MVHSWLELASVIPFHFVCACPKG--YEPDKERVSKAKQAGLSKIEITNDPKEAVIGADVV 290
           + +SW+ELA ++PFHFV ACP+   Y PD   + +A++   S IEI +DP EA   ADV+
Sbjct: 179 VANSWIELAGILPFHFVLACPQNEEYMPDTTLLEEARRNSGSTIEIVHDPMEAAKNADVL 238

Query: 291 YSDVWASMGQKDEAEARRKAFQGFQVDEALMKLAGQKAYFMHCLPAERGVEVTNGVVEAP 350
           Y+DVW SMGQ+DE   R KAF  +Q++ A+++ +   A  MHC+PA RG E++  V++ P
Sbjct: 239 YTDVWTSMGQEDEVAERLKAFSSYQINSAMLRQSKPSAVVMHCMPAHRGQEISAEVMDGP 298

Query: 351 YSIVFPQAENRMHAQNAIMLHLL 373
            SI+  +AENR+H Q A+++ LL
Sbjct: 299 QSIIMDEAENRLHVQKALLVKLL 321


Lambda     K      H
   0.319    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 282
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 344
Length adjustment: 29
Effective length of query: 346
Effective length of database: 315
Effective search space:   108990
Effective search space used:   108990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_012505645.1 PAES_RS05395 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.3820.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3820.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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