Alignments for a candidate for hisF in Prosthecochloris aestuarii DSM 271

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate WP_012506163.1 PAES_RS08055 imidazole glycerol phosphate synthase subunit HisF

Query= BRENDA::Q9X0C6
         (253 letters)



>NCBI__GCF_000020625.1:WP_012506163.1
          Length = 251

 Score =  288 bits (736), Expect = 1e-82
 Identities = 148/251 (58%), Positives = 187/251 (74%), Gaps = 1/251 (0%)

Query: 1   MLAKRIIACLDVKDGRVVKGTNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRK 60
           MLAKRII CLDV+DGRVVKG NFE LRD+G  +E  +FY+    DELVFLDI+AS+E RK
Sbjct: 1   MLAKRIIPCLDVRDGRVVKGINFEGLRDAGSILEQARFYNGELADELVFLDISASLESRK 60

Query: 61  TMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTF 120
           T L  V KV+E++ IP TVGGGI   E A +  + GADKVS+NTAA+  P LI++IA+ F
Sbjct: 61  TTLGEVLKVSEEVFIPLTVGGGISSVERAHDAFMHGADKVSVNTAAIATPELISRIAEKF 120

Query: 121 GSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS 180
           GSQAVVVAID K+V  +++V T+SGKK T     +W  +VEK GAGEILLTS+DRDGTKS
Sbjct: 121 GSQAVVVAIDVKKVGNDYIVHTHSGKKPTQYEAMEWAHKVEKLGAGEILLTSMDRDGTKS 180

Query: 181 GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-ADAALAASVFHFREIDVRELKE 239
           GYD  +++ +     +P+IASGGAG +EH  + F  G ADAALAAS+FHFR+  +RE K 
Sbjct: 181 GYDNVILKAISTSVNIPVIASGGAGNLEHLYQGFAEGHADAALAASIFHFRQYSIREAKT 240

Query: 240 YLKKHGVNVRL 250
           YL++ G+ VRL
Sbjct: 241 YLRERGIVVRL 251


Lambda     K      H
   0.320    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 228
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 251
Length adjustment: 24
Effective length of query: 229
Effective length of database: 227
Effective search space:    51983
Effective search space used:    51983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)

Align candidate WP_012506163.1 PAES_RS08055 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.32462.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32462.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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