Alignments for a candidate for cysK in Prosthecochloris aestuarii DSM 271

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate WP_012506546.1 PAES_RS09995 cysteine synthase A

Query= BRENDA::P9WP55
         (310 letters)



>NCBI__GCF_000020625.1:WP_012506546.1
          Length = 308

 Score =  394 bits (1012), Expect = e-114
 Identities = 200/307 (65%), Positives = 239/307 (77%)

Query: 1   MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGL 60
           M++ E IT+ +GRTPLVR+RR+ D + AD+ AKLE FNP +SVKDR+GVAM++ AE+ GL
Sbjct: 1   MNVYESITETVGRTPLVRIRRMADHSYADVYAKLESFNPLSSVKDRVGVAMIEDAERNGL 60

Query: 61  IKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 120
           I P+T I+EPTSGNTGIALA  CA+RGYR +LTMP+TMS+ERR LL+  GAEL+LT GA 
Sbjct: 61  IGPETTIIEPTSGNTGIALAFSCASRGYRLILTMPDTMSVERRRLLKILGAELVLTEGAA 120

Query: 121 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 180
           GM GAIA+AE L  +     + QQF NPANP  HR TTA E+W DTDG+VDI +AGVGTG
Sbjct: 121 GMKGAIAEAERLVDSIPHSLMLQQFNNPANPETHRRTTAREIWDDTDGQVDIFIAGVGTG 180

Query: 181 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 240
           GTITGV  V++E KP    VAVEP  SPV+SGG+ GPH IQGIGAGFVP  LD  ++DEI
Sbjct: 181 GTITGVGSVLRELKPGVHIVAVEPDDSPVISGGEPGPHKIQGIGAGFVPGNLDPSVIDEI 240

Query: 241 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYL 300
           ITV N+DA   AR+LAR+EG+L GISSGAA  AA+ VA RP   GK IVV+LPD GERYL
Sbjct: 241 ITVSNQDAAETARKLARKEGILCGISSGAAMWAAMSVAARPAMEGKNIVVLLPDTGERYL 300

Query: 301 STPLFAD 307
           ST LFAD
Sbjct: 301 STWLFAD 307


Lambda     K      H
   0.318    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 329
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 308
Length adjustment: 27
Effective length of query: 283
Effective length of database: 281
Effective search space:    79523
Effective search space used:    79523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_012506546.1 PAES_RS09995 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.31637.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31637.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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