Alignments for a candidate for asp-kinase in Prosthecochloris aestuarii DSM 271

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_012506710.1 PAES_RS10835 lysine-sensitive aspartokinase 3

Query= BRENDA::Q57991
         (473 letters)



>NCBI__GCF_000020625.1:WP_012506710.1
          Length = 471

 Score =  307 bits (787), Expect = 4e-88
 Identities = 189/476 (39%), Positives = 280/476 (58%), Gaps = 35/476 (7%)

Query: 4   VMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIA 63
           VMKFGGTSVG+   +R    IV   KK+    +VV+SA S +TN L+EI+  A + R   
Sbjct: 3   VMKFGGTSVGTASAMRRAMAIVADVKKKKSAPLVVLSACSGMTNLLIEIAGAAGEGR--- 59

Query: 64  KVGDFIKF---IREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPK 120
            +GD +     +R  H     E +K       +++ I+  + ELE ++ GV  +GELT +
Sbjct: 60  -LGDALAMAEEVRLHHLSIAGELVKDPVRSAALQEKIEGYVNELEMLVKGVDIVGELTAR 118

Query: 121 SRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKER--- 177
           S D   SFGE LS+ + S A+ D G     ++     +ITD+NFG+AR      +E    
Sbjct: 119 SFDTFCSFGELLSTTVFSEAMLDAGHACSWVDARSV-MITDDNFGTARPLEGRCEENVHS 177

Query: 178 -LLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVY 236
            + PLL  G I V  GFIG + +G  TT+GRGGSD++AAL+G  L +D I+IWTDV GV 
Sbjct: 178 VIKPLLDAGTIVVTQGFIGASADGKTTTMGRGGSDFTAALLGAWLPSDQIQIWTDVDGVM 237

Query: 237 TTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGT 296
           T DPR+VP AR I  L++ EA ELAY GAKVLHP TI PA+++ IP+ V N+  P+++GT
Sbjct: 238 TCDPRIVPQARSIRVLTFSEAAELAYLGAKVLHPDTIAPAVKQNIPVYVLNSLHPDAKGT 297

Query: 297 LITNDMEMSD-----SIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVIL 351
           +ITND ++ D      +VK+I+  K   ++N     M+G  G     F       V+V +
Sbjct: 298 VITNDPDILDGMSYGGLVKSIAVKKGQCIVNFRSNRMLGRHGFLIEFFNVFARAGVSVEM 357

Query: 352 ISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVG 411
           IS  +SE ++SL VS+     A+  L RE    G           +V ++ +V  +SVVG
Sbjct: 358 IS--TSEVSVSLTVSD---TAAVDGLVRELAGMG-----------EVELEHNVATVSVVG 401

Query: 412 AGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKF 467
             +R ++G+AG+IF+A+ +   NI+MI+QG+SE+N+ FV++E+++   V  LH +F
Sbjct: 402 DNLRMSRGVAGRIFSALKD--VNIRMISQGASEINVGFVVEEREVPKAVENLHHEF 455


Lambda     K      H
   0.316    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 507
Number of extensions: 24
Number of successful extensions: 9
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 471
Length adjustment: 33
Effective length of query: 440
Effective length of database: 438
Effective search space:   192720
Effective search space used:   192720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_012506710.1 PAES_RS10835 (lysine-sensitive aspartokinase 3)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.697.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.697.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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