Align ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 (characterized)
to candidate WP_012543079.1 KVAR_RS22925 ornithine carbamoyltransferase
Query= CharProtDB::CH_004146
(334 letters)
>NCBI__GCF_000025465.1:WP_012543079.1
Length = 334
Score = 604 bits (1558), Expect = e-178
Identities = 296/334 (88%), Positives = 316/334 (94%)
Query: 1 MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTR 60
MS FY KHFLKLLDFTPAE+ +LL+LAAKLKADKK+G E KL GKNIALIFEKDSTRTR
Sbjct: 1 MSAFYQKHFLKLLDFTPAEITALLELAAKLKADKKNGIEVQKLAGKNIALIFEKDSTRTR 60
Query: 61 CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY 120
CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRG+GQE+VETLA+Y
Sbjct: 61 CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAQY 120
Query: 121 ASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALT 180
A VPVWNGLTNEFHPTQLLADLLTM+EHLPGKAFN+MTLVYAGDARNNMGNSMLEAAALT
Sbjct: 121 AGVPVWNGLTNEFHPTQLLADLLTMKEHLPGKAFNQMTLVYAGDARNNMGNSMLEAAALT 180
Query: 181 GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEA 240
GLDLRLVAP ACWPE+ LV C ALA+Q GGNITLTED+A GV+GADFIYTDVWVSMGEA
Sbjct: 181 GLDLRLVAPSACWPESQLVETCTALAKQQGGNITLTEDIAAGVKGADFIYTDVWVSMGEA 240
Query: 241 KEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGME 300
KEKWAERIALLR+YQVNS M+ LTGNP+VKFLHCLPAFHDDQTTLGK+MA ++GLHGGME
Sbjct: 241 KEKWAERIALLRDYQVNSAMLALTGNPQVKFLHCLPAFHDDQTTLGKQMAADYGLHGGME 300
Query: 301 VTDEVFESAASIVFDQAENRMHTIKAVMVATLSK 334
VTDEVFESAAS+VFDQAENRMHTIKAVMVATLSK
Sbjct: 301 VTDEVFESAASVVFDQAENRMHTIKAVMVATLSK 334
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 461
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 334
Length adjustment: 28
Effective length of query: 306
Effective length of database: 306
Effective search space: 93636
Effective search space used: 93636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)
Align candidate WP_012543079.1 KVAR_RS22925 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.29249.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29249.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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