Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_012543258.1 KVAR_RS24945 argininosuccinate lyase
Query= ecocyc::ARGSUCCINLYA-MONOMER
(457 letters)
>NCBI__GCF_000025465.1:WP_012543258.1
Length = 457
Score = 849 bits (2193), Expect = 0.0
Identities = 431/456 (94%), Positives = 441/456 (96%)
Query: 1 MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEE 60
MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVL+A EQ QLEE
Sbjct: 1 MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLSAAEQQQLEE 60
Query: 61 ALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLW 120
ALNVLLE+VRA PQQIL SDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLW
Sbjct: 61 ALNVLLEEVRANPQQILASDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLW 120
Query: 121 CKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDE 180
CKDTV ELL+ANRQLQSALVETAQ+NQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDE
Sbjct: 121 CKDTVVELLSANRQLQSALVETAQHNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDE 180
Query: 181 SRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS 240
SRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS
Sbjct: 181 SRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS 240
Query: 241 AAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQ 300
A+IGMVHLSRFAEDLIFFN+GEA FVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQ
Sbjct: 241 DASIGMVHLSRFAEDLIFFNSGEANFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQ 300
Query: 301 GALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAA 360
GALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMA LVLDGIQVKRPRC EAA
Sbjct: 301 GALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMATLVLDGIQVKRPRCAEAA 360
Query: 361 QQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDED 420
QQGYANATELADYLVAKGVPFREAHHIVGEAVVEAI QGKPLE LPL +LQKFS VI +D
Sbjct: 361 QQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIAQGKPLEALPLVDLQKFSPVIADD 420
Query: 421 VYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARL 456
VYPILSLQSCLDKRAAKGGVSPQQVAQAI+ A+ARL
Sbjct: 421 VYPILSLQSCLDKRAAKGGVSPQQVAQAISDAKARL 456
Lambda K H
0.318 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 745
Number of extensions: 20
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 457
Length adjustment: 33
Effective length of query: 424
Effective length of database: 424
Effective search space: 179776
Effective search space used: 179776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Align candidate WP_012543258.1 KVAR_RS24945 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))
../bin/blast/fastacmd -i /tmp/list.7987.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7987.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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