Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate WP_012566351.1 RC1_RS05465 phosphoribosyl-AMP cyclohydrolase
Query= SwissProt::O26347
(138 letters)
>NCBI__GCF_000016185.1:WP_012566351.1
Length = 133
Score = 127 bits (319), Expect = 6e-35
Identities = 62/120 (51%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 19 NGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQR 78
+ + L+ A+AQ H+TGEVLM+A+MNRE+++ TL G YWS SR LW KG++SG +Q
Sbjct: 16 DADGLVPAIAQQHDTGEVLMLAWMNRESIKETLAGGRVVYWSRSRRALWRKGDTSGQIQH 75
Query: 79 VKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSIDGDELKVREDAVKVFDPEEIYGDG 138
+K++ +DCDGDA++L V+Q G ACHTG R+CFYR++ L V D V+V EE+YG G
Sbjct: 76 LKELRLDCDGDALLLLVDQVGVACHTGRRNCFYRAVRDGTLAVIAD-VEV-PAEELYGKG 133
Lambda K H
0.318 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 133
Length adjustment: 15
Effective length of query: 123
Effective length of database: 118
Effective search space: 14514
Effective search space used: 14514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)
Align candidate WP_012566351.1 RC1_RS05465 (phosphoribosyl-AMP cyclohydrolase)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.5653.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5653.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.