Alignments for a candidate for ilvD in Rhodospirillum centenum SW; ATCC 51521

Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_012566366.1 RC1_RS05545 dihydroxy-acid dehydratase

Query= SwissProt::P9WKJ5
         (575 letters)



>NCBI__GCF_000016185.1:WP_012566366.1
          Length = 577

 Score =  560 bits (1443), Expect = e-164
 Identities = 291/553 (52%), Positives = 374/553 (67%), Gaps = 6/553 (1%)

Query: 21  SRDVTDGLEKAAARGMLRAVGMDDEDFAKPQIGVASSWNEITPCNLSLDRLANAVKEGVF 80
           SR V+ G E+A  R    A+GM +++ A+P +GVA+ WNE  PCN++L+R A AVK GV 
Sbjct: 16  SRHVSVGPERAPHRSYYYAMGMTEQEIARPFVGVATCWNEAAPCNIALNRQAQAVKTGVK 75

Query: 81  SAGGYPLEFGTISVSDGISMGHEGMHFSLVSREVIADSVEVVMQAERLDGSVLLAGCDKS 140
           +  G P EF TI+V+DGI+MGH+GM  SLVSREVIADSVE+ M+    D  V LAGCDKS
Sbjct: 76  AEQGTPREFTTITVTDGIAMGHQGMKASLVSREVIADSVELTMRGHCYDALVGLAGCDKS 135

Query: 141 LPGMLMAAARLDLAAVFLYAGSILPGRAKLSDGSERDVTIIDAFEAVGACSRGLMSRADV 200
           LPGM+MA  RL++ +VF+Y GSILPG+ +      +DVT+ D FEAVGA S G M   D+
Sbjct: 136 LPGMMMAMVRLNVPSVFMYGGSILPGKFR-----GKDVTVQDVFEAVGAFSAGRMDEKDL 190

Query: 201 DAIERAICPGEGACGGMYTANTMASAAEALGMSLPGSAAPPATDRRRDGFARRSGQAVVE 260
             +E   CPG GACGG YTANTMA  +EA+G++LPGSA  PA    RD +A  SG+AV++
Sbjct: 191 HELECCACPGSGACGGQYTANTMACVSEAIGLALPGSAGAPAPYESRDAYAEASGRAVMK 250

Query: 261 LLRRGITARDILTKEAFENAIAVVMAFGGSTNAVLHLLAIAHEANVALSLQDFSRIGSGV 320
           L+   +  RDI+T++A ENA  VV A GGSTNA LHL AIAHEA +   L D + +    
Sbjct: 251 LVEMNLRPRDIVTRKALENAAVVVAASGGSTNAALHLPAIAHEAGIEFDLHDVAAVFRRT 310

Query: 321 PHLADVKPFGRHVMSDVDHIGGVPVVMKALLDAGLLHGDCLTVTGHTMAENLAAITPPDP 380
           P++AD+KP GR V  D+  +GGVPV+MKALLD G LHGDC+TVTG T+AENLA +  P  
Sbjct: 311 PYIADLKPGGRFVAKDLFEVGGVPVLMKALLDGGFLHGDCITVTGRTIAENLADVVFP-T 369

Query: 381 DGKVLRALANPIHPSGGITILHGSLAPEGAVVKTAGFDSDVFEGTARVFDGERAALDALE 440
           D +V+R  + P+ P+GG+  L G+LAP+GA+VK AG  +  F G AR FD E  A  A+E
Sbjct: 370 DQEVIRPTSAPLSPTGGVVGLRGNLAPQGAIVKVAGMKNLRFSGPARCFDREEDAFAAVE 429

Query: 441 DGTITVGDAVVIRYEGPKGGPGMREMLAITGAIKGAGLGKDVLLLTDGRFSGGTTGLCVG 500
                 G+ +VIRYEGP+GGPGMREMLA T A+ G G+G  V L+TDGRFSG T G C+G
Sbjct: 430 RREYKEGEVIVIRYEGPRGGPGMREMLATTAALYGQGMGDKVALITDGRFSGATRGFCIG 489

Query: 501 HIAPEAVDGGPIALLRNGDRIRLDVAGRVLDVLADPAEFASRQQDFSPPPPRYTTGVLSK 560
           H+ PEA  GGPI LLR+GD I +D     L V    AE A R++ + P    + +G + K
Sbjct: 490 HVGPEAAVGGPIGLLRDGDVITIDATTGELSVALSDAELAERRKGWQPRRHDFQSGAIWK 549

Query: 561 YVKLVSSAAVGAV 573
           Y + V  A  GAV
Sbjct: 550 YAQTVGDAEKGAV 562


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1012
Number of extensions: 44
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 577
Length adjustment: 36
Effective length of query: 539
Effective length of database: 541
Effective search space:   291599
Effective search space used:   291599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_012566366.1 RC1_RS05545 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.6124.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6124.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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