Alignments for a candidate for hisD in Rhodospirillum centenum SW; ATCC 51521

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate WP_012566836.1 RC1_RS07905 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>NCBI__GCF_000016185.1:WP_012566836.1
          Length = 433

 Score =  525 bits (1352), Expect = e-153
 Identities = 273/428 (63%), Positives = 330/428 (77%)

Query: 1   MVTTLRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRID 60
           M   L   DP FE  FA  L+ KREV EDV+ AV  ++  VR  GD+A++ Y+RR+DR D
Sbjct: 1   MPLRLSTRDPGFEAGFATLLAAKREVQEDVNAAVATVLADVRAHGDTAVIGYTRRWDRQD 60

Query: 61  LEKTGIAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSR 120
           L    + +T AEIDAA     A T+ AL  A  RIE  H RQ P+   +TDA GV LG+R
Sbjct: 61  LTPETLRITAAEIDAAVARCDAGTLAALHEAAARIEAFHRRQQPEALSFTDAQGVRLGAR 120

Query: 121 WTAIEAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAG 180
           WT + AVG+YVPGGTA+YPSSVLMNAMPA+VAGV RI MVVP PDG LNPLVL AAR AG
Sbjct: 121 WTPVGAVGIYVPGGTAAYPSSVLMNAMPARVAGVPRIAMVVPTPDGVLNPLVLAAARAAG 180

Query: 181 VSEIYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVL 240
           V+EIYR+GGAQA+AALAYGT+TI PV KIVGPGNAYVAAAKR VFGTVGIDMIAGPSE+L
Sbjct: 181 VTEIYRIGGAQAVAALAYGTDTIAPVDKIVGPGNAYVAAAKRQVFGTVGIDMIAGPSEIL 240

Query: 241 IVADKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASA 300
           +VAD  N+P WIAADLL+QAEHD ++Q+IL+T+D AFA AV  AVE  L TL R   A+A
Sbjct: 241 VVADGANDPAWIAADLLSQAEHDESSQAILLTDDAAFADAVAAAVEAHLATLPRARIAAA 300

Query: 301 SWRDFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIG 360
           SW+  GA+++++D  +A  L +R+A EHLE+AVAD +A   R+RNAG+IF+G +TPE IG
Sbjct: 301 SWQAHGAIVVLRDLAEAPALVDRLAPEHLELAVADPDALAARVRNAGAIFLGRHTPEAIG 360

Query: 361 DYVGGCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAH 420
           DYV G NHVLPTARSARFSSGL+VLD+MKRT+L+   +  L A+GPAA+ +ARAEGL+AH
Sbjct: 361 DYVAGPNHVLPTARSARFSSGLNVLDFMKRTTLVGCDACSLAAIGPAAVTLARAEGLEAH 420

Query: 421 AQSVAIRL 428
           A SVAIRL
Sbjct: 421 ALSVAIRL 428


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 534
Number of extensions: 18
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 433
Length adjustment: 32
Effective length of query: 398
Effective length of database: 401
Effective search space:   159598
Effective search space used:   159598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_012566836.1 RC1_RS07905 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.13875.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13875.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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