Alignments for a candidate for cysK in Rhodospirillum centenum SW; ATCC 51521

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate WP_012568193.1 RC1_RS14565 cysteine synthase A

Query= BRENDA::Q2PZM5
         (319 letters)



>NCBI__GCF_000016185.1:WP_012568193.1
          Length = 333

 Score =  490 bits (1261), Expect = e-143
 Identities = 250/316 (79%), Positives = 278/316 (87%)

Query: 4   SEFRGKIYDSILDTVGATPLVRVNRLAEDAGAKAQIVGKLEFFNPLASVKDRIGFAMIDA 63
           +EFRG+IYDSILDTVGATPLVR++RLA   G  A +V K EFFNPL+SVKDRIG AMI+A
Sbjct: 18  AEFRGRIYDSILDTVGATPLVRLSRLAAKHGVVADVVAKCEFFNPLSSVKDRIGKAMIEA 77

Query: 64  AERAGTIEPGRTTLVEPTSGNTGIALAFVAAAKGYRLILTMPESMSVERRKMLKLLGAEL 123
           AE  G I P RT LVEPTSGNTGIALAFVAAAKGYRLILTMPESMSVERRKMLKLLGAEL
Sbjct: 78  AEADGLIAPDRTVLVEPTSGNTGIALAFVAAAKGYRLILTMPESMSVERRKMLKLLGAEL 137

Query: 124 VLTPAAEGMKGAIRRADEIVATDPNAYMLQQFKNAANPEIHRNTTAEEIWKDTDGKADFL 183
           VLTPA  GMKGAI RA+EIVA+ P+AYMLQQFKN ANP +HR TTAEEIW+DT G+AD L
Sbjct: 138 VLTPAPNGMKGAIARAEEIVASTPDAYMLQQFKNPANPAVHRRTTAEEIWRDTAGRADVL 197

Query: 184 ISGVGTGGTLTGVSEVLKARKPGFRTIAVEPEDSPVLSGGMPGPHKIQGIGAGFVPDVLK 243
           ++GVGTGGTLTGV+EVLKAR+P FR +AVEPEDSPVLSGG+PGPHKIQGIGAGFVPDVL 
Sbjct: 198 VAGVGTGGTLTGVAEVLKARRPDFRVVAVEPEDSPVLSGGLPGPHKIQGIGAGFVPDVLA 257

Query: 244 KDLIDEVVRISNQRAFETARKVAKLEGIPVGISSGAALAAALEIGSRPENEGKLIVVILP 303
           +D IDEV+RISN RAFE AR  A  EG+ VGISSGAALAAA E+G+RPE + +LIVVILP
Sbjct: 258 RDRIDEVLRISNSRAFELARDAAATEGLAVGISSGAALAAAFEVGARPEMKDRLIVVILP 317

Query: 304 SFAERYLSTALFEGLE 319
           SFAERYLSTALF+GL+
Sbjct: 318 SFAERYLSTALFDGLD 333


Lambda     K      H
   0.316    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 383
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 333
Length adjustment: 28
Effective length of query: 291
Effective length of database: 305
Effective search space:    88755
Effective search space used:    88755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_012568193.1 RC1_RS14565 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.7864.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7864.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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