Alignments for a candidate for hisA in Rhodospirillum centenum SW; ATCC 51521

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_012568438.1 RC1_RS15785 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::azobra:AZOBR_RS01680
         (249 letters)



>NCBI__GCF_000016185.1:WP_012568438.1
          Length = 247

 Score =  358 bits (920), Expect = e-104
 Identities = 176/238 (73%), Positives = 202/238 (84%)

Query: 1   MIIYPAIDLKDGACVRLLRGEMSQATVFNTEPADQARLFESQGFEWLHLVDLNGAFEGKP 60
           M IYPAIDLKDG  VRLLRG+M QATVFN +PA QA  F+ QGF WLHLVDLNGAF G+P
Sbjct: 1   MNIYPAIDLKDGQAVRLLRGDMDQATVFNPDPAAQAAAFQDQGFRWLHLVDLNGAFAGRP 60

Query: 61  VNGKAVESILGAVAIPVQLGGGIRDLKTIAHWLEKGVSRVILGTVALREPELVREACREF 120
           VN  AV  IL  V IPVQLGGGIRD+ TI  WL +G+ RVILGTVALR+P+LV++ACR F
Sbjct: 61  VNADAVSRILERVTIPVQLGGGIRDMATIEEWLGRGIRRVILGTVALRDPDLVKDACRAF 120

Query: 121 PGKVAVGIDAREGYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRDGAMGGVNVE 180
           PG++ VGIDAR+G+VAV GWA TS ++ALDLAL+FED+GVAAI+YTDINRDGAMGGVNVE
Sbjct: 121 PGRICVGIDARDGHVAVEGWATTSDVRALDLALRFEDAGVAAIVYTDINRDGAMGGVNVE 180

Query: 181 ATSDLAFHLTTPVIASGGVSSIDDLIALKKEEDTGIEGVICGRALYDGRIDPKTALDL 238
           AT+DLA HLTTPVIASGGV ++ DL+ALK E +TGIEGVI GRALYDGRIDP+ AL L
Sbjct: 181 ATADLAVHLTTPVIASGGVHALSDLLALKAEAETGIEGVIVGRALYDGRIDPRQALAL 238


Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 306
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 247
Length adjustment: 24
Effective length of query: 225
Effective length of database: 223
Effective search space:    50175
Effective search space used:    50175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_012568438.1 RC1_RS15785 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.18094.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18094.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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