Alignments for a candidate for thrC in Rhodospirillum centenum SW; ATCC 51521

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_012568767.1 RC1_RS17420 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_000016185.1:WP_012568767.1
          Length = 471

 Score =  497 bits (1280), Expect = e-145
 Identities = 259/465 (55%), Positives = 323/465 (69%), Gaps = 3/465 (0%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           MKY+STRG+AP L F + LLAGLARDGGLY+P  +P    + +RALRG+ Y EVA AV+ 
Sbjct: 1   MKYISTRGQAPALPFDEVLLAGLARDGGLYVPDAWPALGPDALRALRGRPYDEVAAAVML 60

Query: 61  PFTGGEIPAADFERMVREAYG--TFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQL 118
           PF GG I  ADF R++ + YG   F H AV PLVQ D   +++ELFHGPTLAFKDVA+QL
Sbjct: 61  PFLGGRIAEADFRRLLADTYGPSVFAHRAVTPLVQLDQRTWLMELFHGPTLAFKDVALQL 120

Query: 119 LARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMT 178
           L R+ D+VLA RGER T+VGATSGDTG AAIEA   R+  DI IL P+GR S VQ+RQMT
Sbjct: 121 LGRLFDHVLAVRGERMTVVGATSGDTGSAAIEACRDRERVDIVILHPHGRTSAVQRRQMT 180

Query: 179 SSGFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAA 238
           +    NVH ++++G FDDCQ+ VK MFND  F D L LS VNSINWARIM Q+VYY  AA
Sbjct: 181 TVLSPNVHNVALQGTFDDCQDAVKAMFNDAAFRDGLHLSAVNSINWARIMAQIVYYVAAA 240

Query: 239 LSLGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMR 298
           ++LGAPDR V+F VPTGNFG+++A Y A+ MG+P+ +LI+ +N NDIL+R   SG  E R
Sbjct: 241 VALGAPDRPVAFAVPTGNFGNVYAAYAARAMGVPVAKLIVGSNANDILARFFASGRMETR 300

Query: 299 GVAQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEF 358
            V  T SPSMDIQISSNFERLLF+   RD AAV   M   ++SG F +S+  L+     F
Sbjct: 301 AVVPTISPSMDIQISSNFERLLFDLMDRDGAAVATSMAEFRRSGRFAVSQGQLARALELF 360

Query: 359 SAGRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAR-EKASGTAPMVVLATAHPAKFPD 417
              R   + T  T+  V    G L+DPH+A+GV  A+      + P+V LA AHPAKFPD
Sbjct: 361 EGHRCGEEATLETMARVHRDSGLLIDPHTAVGVAAAQAADLDPSVPVVSLACAHPAKFPD 420

Query: 418 AVKAACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHHSR 462
           AV+ A GV P LP  L DL +R+E  TVL N+L  ++++VR  SR
Sbjct: 421 AVEKATGVRPGLPRHLADLFEREERVTVLPNDLGTLQDFVRARSR 465


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 569
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 471
Length adjustment: 33
Effective length of query: 430
Effective length of database: 438
Effective search space:   188340
Effective search space used:   188340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_012568767.1 RC1_RS17420 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.19666.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19666.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.