Alignments for a candidate for leuB in Rhodospirillum centenum SW; ATCC 51521

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_012569077.1 RC1_RS18930 3-isopropylmalate dehydrogenase

Query= BRENDA::P24404
         (370 letters)



>NCBI__GCF_000016185.1:WP_012569077.1
          Length = 370

 Score =  484 bits (1246), Expect = e-141
 Identities = 244/367 (66%), Positives = 293/367 (79%), Gaps = 1/367 (0%)

Query: 4   RSLFLLPGDGIGPEAMTEVRKLIEYMNSAHNAGFTVSEGLVGGSAYDAHGVAISDADMEK 63
           RSL LLPGDGIGPE M +VR+ I++M       FTV EGLVGG+A DA GV ++DA +EK
Sbjct: 5   RSLLLLPGDGIGPEVMRQVRRYIDWMARKRGIEFTVEEGLVGGAAIDAQGVPLTDATLEK 64

Query: 64  ALAADAILFGAVGGPKWDGVPYEHRPEAGLLRLRKDLELFANLRPAICYPALAAASSLKP 123
           A AADA+LFGAVGGPKWDG+ ++ RPEAGLLRLRK+L+LFANLRPA  + AL  ASSLKP
Sbjct: 65  AKAADAVLFGAVGGPKWDGLGFDMRPEAGLLRLRKELDLFANLRPAKVFDALVDASSLKP 124

Query: 124 ELVEGLDILIVRELTGGVYFGEPKQIIDLGNGQKRGIDTQIYDTFEIERIASVAFELARS 183
           ++V GLD++IVRELTGG+YFGEP+ I DLGNGQ+RG++TQ+Y T EI R+A +AFELAR 
Sbjct: 125 DIVRGLDVMIVRELTGGIYFGEPRGIEDLGNGQRRGVNTQVYTTAEIHRVARIAFELARK 184

Query: 184 RDNRVCSMEKRNVMKSGVLWNQVVTETHAAKYKDVQLEHMLADAGGMQLVRKPKQFDVIV 243
           R N+VCS+EK NVM+SG+LW Q VT  H A+Y DV+L HMLADA  MQLVR P QFDVIV
Sbjct: 185 RGNKVCSVEKGNVMESGLLWRQEVTALHRAEYGDVELSHMLADACSMQLVRNPGQFDVIV 244

Query: 244 TDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDAKTGKRKAMYEPVHGSAPDIAGKSIANP 303
           TDNLFGDMLSD AAMLTGS+GMLPSASLGAPDA  G+R+A+YEPVHGSAPDIAG+ +ANP
Sbjct: 245 TDNLFGDMLSDEAAMLTGSIGMLPSASLGAPDA-DGRRRALYEPVHGSAPDIAGRDMANP 303

Query: 304 IAMIASFAMCLRYSFNMVDEATKLEAAIANVLDKGIRTADIMADGCRQVGTSDMGDAVLA 363
           IAM+ S  M LR+SF++  EA  LE A+ NVL  G+RT+DIM  G  +  TS M D +L 
Sbjct: 304 IAMLLSLGMALRWSFDLHAEADMLEQAVQNVLRTGMRTSDIMQPGMARCSTSVMADTILR 363

Query: 364 EFKALSA 370
           E   L+A
Sbjct: 364 ELDKLAA 370


Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 477
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 370
Length adjustment: 30
Effective length of query: 340
Effective length of database: 340
Effective search space:   115600
Effective search space used:   115600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_012569077.1 RC1_RS18930 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.19739.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19739.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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