Alignments for a candidate for argE in Methylocella silvestris BL2

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_012590053.1 MSIL_RS05240 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000021745.1:WP_012590053.1
          Length = 393

 Score =  222 bits (565), Expect = 2e-62
 Identities = 133/367 (36%), Positives = 190/367 (51%), Gaps = 10/367 (2%)

Query: 3   AAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEAR 62
           A  +L +LVGF +     N  +V+ +  YL   G     +P   GD++ +F TIGPK   
Sbjct: 15  AIAMLERLVGFDTESSKSNLALVAAVETYLRECGADYVKIPNAIGDKAALFITIGPKIDG 74

Query: 63  GYIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLR 122
           G ++SGH DVVP     W+SDPF+LR E  RLYGRG  DMKGF +  LA +P+     L 
Sbjct: 75  GVVLSGHTDVVPVEGQSWSSDPFQLRREEGRLYGRGACDMKGFDSICLAMIPEFQKAALS 134

Query: 123 RPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVR 182
           RP+H+ LSYDEE  CRG    I R      +P   ++GEPT M+   AHK     R  V 
Sbjct: 135 RPIHILLSYDEETTCRGSLDTIRRFGADLPRPGAILVGEPTLMQVADAHKAIVTYRTIVH 194

Query: 183 GRSGHSSRPDQGLNAIHGVAGVLTQAVAEADRL--VGGPFEHVFEPPYSSLQIGTVKGGQ 240
           G   HSS+P  G NA+     ++T+     + L   G P    F+PP S++++G + GG 
Sbjct: 195 GHEAHSSKPYLGANAVETACDLVTELYRFNEELGRRGDPSGR-FDPPASTIEVGVIHGGT 253

Query: 241 AVNIIPDSCEVEFEARAISGVDPAELLAPVRK--TAEALTTLGFEVEWQELSAY-----P 293
           A NI+   C  ++E R++        LA +       AL  L    +   +  +     P
Sbjct: 254 ARNILAKQCAFDWEFRSLPDTPQNLALAHLESYIARVALPNLTRNAKDASIETFAEVEVP 313

Query: 294 ALSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYI 353
            L   P +   +L  +L    +  +V Y TEAG FQ AG   ++CGPG I +AH+PDE++
Sbjct: 314 GLGPAPGSVAESLALKLARSNSTISVPYATEAGQFQAAGAPTVVCGPGSIDQAHQPDEFL 373

Query: 354 LIDELMA 360
            I ++ A
Sbjct: 374 EIAQVEA 380


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 384
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 393
Length adjustment: 30
Effective length of query: 344
Effective length of database: 363
Effective search space:   124872
Effective search space used:   124872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012590053.1 MSIL_RS05240 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.4857.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4857.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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