Alignments for a candidate for thrC in Methylocella silvestris BL2

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_012590290.1 MSIL_RS06420 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_000021745.1:WP_012590290.1
          Length = 473

 Score =  545 bits (1403), Expect = e-159
 Identities = 277/461 (60%), Positives = 341/461 (73%), Gaps = 3/461 (0%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           MKYVSTRGEA  L F+  LLAGLA DGGLYLP+ YP+  AE+I +  GKSY +V  AV++
Sbjct: 1   MKYVSTRGEAAPLSFTQTLLAGLAPDGGLYLPESYPRLDAERIASFSGKSYTDVTEAVIS 60

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           PF GGEI  A    M+ +AY  FRH AV PLVQ D N F LELFHGPTLAFKD+AMQLLA
Sbjct: 61  PFIGGEIVPAALRAMIDDAYAGFRHPAVAPLVQLDDNLFTLELFHGPTLAFKDLAMQLLA 120

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           R++D+ L  RG+RAT+VGATSGDTG AAIEAF G    ++FIL+P+ RVS VQ+RQMT++
Sbjct: 121 RLVDHALKARGQRATVVGATSGDTGAAAIEAFSGLSQVEVFILYPHQRVSEVQRRQMTTT 180

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
           G  NVHA+++EG+FDD Q+ VK +FN+    ++L+L GVNSINWARI+ Q VYYFTAA++
Sbjct: 181 GAPNVHAIAVEGSFDDAQSAVKALFNNRPLRESLNLCGVNSINWARILAQTVYYFTAAVA 240

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LGAP R VSF  PTGNFGDIFAG++AKRMGLPI++L+IA N NDIL R LESGAY +  V
Sbjct: 241 LGAPHRPVSFVTPTGNFGDIFAGWIAKRMGLPIDRLVIAANSNDILPRALESGAYAVGEV 300

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
             T SPSMDIQ+SSNFERLLFEA GRD AAVR  M  L QS GFTI   PL AIR++F A
Sbjct: 301 HATQSPSMDIQVSSNFERLLFEAQGRDGAAVRAWMAQLSQSRGFTIDPAPLKAIRADFDA 360

Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKAS---GTAPMVVLATAHPAKFPD 417
              +  ET A I  +  + GYL DPH+A+G+  AR + +      P+VVL TAH AKFPD
Sbjct: 361 FSVSEPETTAEIARLWRESGYLADPHTAVGLGAARREIATRGAATPLVVLGTAHAAKFPD 420

Query: 418 AVKAACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVR 458
           A++AA GV P LP  L  L++R E F+++ N+   VE ++R
Sbjct: 421 AIEAATGVRPALPPHLHGLLERAEQFSIIPNDQGAVERFIR 461


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 599
Number of extensions: 25
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 473
Length adjustment: 33
Effective length of query: 430
Effective length of database: 440
Effective search space:   189200
Effective search space used:   189200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_012590290.1 MSIL_RS06420 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.11684.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11684.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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