Alignments for a candidate for argC in Methylocella silvestris BL2

Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate WP_012590884.1 MSIL_RS09525 N-acetyl-gamma-glutamyl-phosphate reductase

Query= reanno::Korea:Ga0059261_0351
         (310 letters)



>NCBI__GCF_000021745.1:WP_012590884.1
          Length = 304

 Score =  294 bits (753), Expect = 2e-84
 Identities = 156/304 (51%), Positives = 197/304 (64%), Gaps = 4/304 (1%)

Query: 1   MSVSVFIDGAAGTTGLEIRERLATRSDISLIGLDDAHRKDAGKRAEAINSADFVILCLPD 60
           M   +FIDG AGTTGL I+ RLA+   I L  L    RKD   +A+ +   D VILCLPD
Sbjct: 1   MQGKIFIDGEAGTTGLGIKTRLASEPGIELRSLPPELRKDRDAKAKLLAGVDVVILCLPD 60

Query: 61  DAAREAVALI---ANDTTRVIDASTAHRVADGWTYGFAELEPAQAAAIAEARYVSNPGCW 117
           DAARE VA++    +   RV+DASTAHRVA GWTYGF EL   QA AIA+A+ +SNPGC+
Sbjct: 61  DAARETVAIVETLGSAGPRVLDASTAHRVAPGWTYGFPELAKGQAEAIAQAKLISNPGCY 120

Query: 118 PTGFLALVRPLVRAGLIPPDWVLTAGGASGYSGGGKSMIAEFEDGSEPTGFRAYGLDLEH 177
            TG +AL+RPLV AGL+P DW +     SGYSGGGK+MIA+++ G+ P  F  Y L LEH
Sbjct: 121 ATGAIALLRPLVDAGLVPADWPVAINAVSGYSGGGKAMIADYQSGAAP-AFELYALGLEH 179

Query: 178 KHLPEMQKHARIDHAPIFQPAVARSYRGMLIEVPLPLQMLPRKPAPAQIEQVLADAYRDS 237
           KH+PE++K+  +   P+F P+V    +GML+ +PL L  LP KP  A  E  LA  Y  +
Sbjct: 180 KHVPEIEKYVGLTRRPLFVPSVGNFAQGMLVSIPLFLDALPGKPGGADFEAALAAHYAGA 239

Query: 238 PIVRVLPSDDVSLVRIEDDAGTDRLTIRVFGNAERGQARLVATLDNLGKGAGGAAVQNLN 297
             VRV P++    +  E    T+ L +RVF N  R Q  LVA LDNLGKGA GAA+QNL 
Sbjct: 240 EFVRVAPAEASGKIEPEALNETNNLELRVFTNEARRQMVLVARLDNLGKGASGAAMQNLG 299

Query: 298 IMAG 301
           +M G
Sbjct: 300 LMLG 303


Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 267
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 304
Length adjustment: 27
Effective length of query: 283
Effective length of database: 277
Effective search space:    78391
Effective search space used:    78391
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_012590884.1 MSIL_RS09525 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.16778.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16778.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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