Alignments for a candidate for dapC in Sulfurihydrogenibium azorense Az-Fu1

Align succinyldiaminopimelate transaminase (EC 2.6.1.17); glutamate-prephenate aminotransferase (EC 2.6.1.79) (characterized)
to candidate WP_012674402.1 SULAZ_RS07135 succinyldiaminopimelate transaminase

Query= BRENDA::Q82IK5
         (364 letters)



>NCBI__GCF_000021545.1:WP_012674402.1
          Length = 392

 Score =  156 bits (395), Expect = 8e-43
 Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 40/390 (10%)

Query: 1   MSAVSDRLPTFPWDKLEPYKARAAAHPDGIVDLSVGTPVDPVPELIQKALV-AAADSPGY 59
           M+     L  +P ++L   KA        I D   G P +P P+ I+KAL+ A  +   Y
Sbjct: 1   MNKTIKNLKNYPMEELNRIKASLKEKGVKIYDFGTGDPKEPTPDFIRKALIDAVPEVSQY 60

Query: 60  PTVWGTPELRDALTGWVERRLGARGVTHHHVLPIVGSKELVAWLPTQLGLGPGDK--VAH 117
           P+V G  +LR+A++ W E+R   +      ++P  GSKE +   P        DK  V  
Sbjct: 61  PSVLGRKDLREAISKWFEKRFNVKLNPDTQIIPSAGSKEAIFHFPLVFIDPEEDKKRVIF 120

Query: 118 PRLAYPTYEVGARLA-----------------RADHVVYDDPTELDPTGLKLLWLNSPSN 160
              AYP YE G   A                 R D V   + + L+ T  K++W+N P N
Sbjct: 121 GTPAYPVYERGTLYAGGIPTAVKLKKEDGFLLRLDKV---EKSILEET--KIVWINYPHN 175

Query: 161 PTGKVLSKAELTRIVAWAREHGILVFSDECYLELGWEADPVSVLHPDVCGGSYEGIVSVH 220
           PTG     +     +   RE+GI++ SDECY EL +E  P S L   +     + +V  H
Sbjct: 176 PTGATAPASYFKETIDMCREYGIILCSDECYTELYFEEKPHSALEFGI-----DNVVVFH 230

Query: 221 SLSKRSNLAGYRAAFLAGDPAVLGPLLQIRKHGGMMTSAPTQAAVVAALGDDAHVREQRE 280
           SLSKRS + GYR+ F+AGD  ++    + R + G+ +    Q A  AA  D+ HV E+ +
Sbjct: 231 SLSKRSGMTGYRSGFVAGDEKIISFYRKERANFGVASPDFIQQAAKAAWEDENHVLERNK 290

Query: 281 RYAARRTALRDALLSHGFRIEHSEASLYLW--ATRGESCWDTVAHLADLGILVAPGDFYG 338
            +  +R    + L   G    + +A+ Y+W  A       D V  L + GI+V+ G+ + 
Sbjct: 291 IFKQKRDLFIEFLNKVGLEYLYPKATFYIWIKAPSWIDAKDYVKALLENGIVVSIGENFC 350

Query: 339 SAGE--------QFVRVALTATDERVAAAV 360
           S+ E        Q+ RVAL  T E    A+
Sbjct: 351 SSLEVSEESCESQYFRVALVPTLEECKEAL 380


Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 386
Number of extensions: 23
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 392
Length adjustment: 30
Effective length of query: 334
Effective length of database: 362
Effective search space:   120908
Effective search space used:   120908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012674402.1 SULAZ_RS07135 (succinyldiaminopimelate transaminase)
to HMM TIGR03537 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.17371.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17371.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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