Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_012674541.1 SULAZ_RS03715 branched-chain amino acid transaminase
Query= BRENDA::F0QW25 (314 letters) >NCBI__GCF_000021545.1:WP_012674541.1 Length = 302 Score = 306 bits (783), Expect = 5e-88 Identities = 149/301 (49%), Positives = 210/301 (69%), Gaps = 1/301 (0%) Query: 14 MKYVWVNGKLIPEKEATIPILTHALHYGTSIFEGIRAYWNSDNNNLYVFRARDHYVRFHD 73 M V+ K + E+EA I I T++ HYGT++FEGIRAY+N +N+ +Y ++HY R Sbjct: 1 MAIVYFENKFVEEEEAKISIKTNSFHYGTAVFEGIRAYYNKENDTMYGLFFKEHYERLFK 60 Query: 74 SAKIMSIKVGYSVDELIDATVELLRANDVHEDVYIRPITFVSASTVNLDIRNLDVTTAII 133 + +I+++++ S+D+L++ T EL++ N+ EDVYIRPI + S + + AI Sbjct: 61 NMRILNMEIEESIDQLVEITKELVKRNNHKEDVYIRPIVYFSDLAIGPKLIGYTAKIAIY 120 Query: 134 TVPFGHYLEP-KGIKAKVVSWLRVHNSMFPMKAKVSGIYVNSVIAIIDAKVSGFDEAILL 192 T+P G Y++ KGIKAKV SW+R++++M P + KV+G YVNS +A +A +SG +EAI+L Sbjct: 121 TLPLGDYIDTNKGIKAKVSSWVRLNDNMIPPRLKVTGAYVNSALAKTEALLSGAEEAIVL 180 Query: 193 NRDGYVAEGSGENIFIIKDGILYTPPVYDSILEGITRDTVITIARDLGLTVTEKRITREE 252 N+DG+V+EGS ENIFI +DG L TPPV D ILEGITR V+ IA DLG+ V E+ I+R E Sbjct: 181 NKDGFVSEGSAENIFIARDGKLITPPVSDDILEGITRKAVMDIATDLGIPVIERSISRTE 240 Query: 253 LYTADEVFFTGTAAEVTPVVNIDGRVIGNGEPGPIALKVRSYYMDVVHGRVSKYKNWLTP 312 LY ADEVFF GT A+++PV+ IDGR IGNG G I K++ Y D V G+V KYKNW+ Sbjct: 241 LYVADEVFFCGTGAQISPVIEIDGRKIGNGTVGDITKKIKDIYFDAVRGKVEKYKNWVVE 300 Query: 313 I 313 I Sbjct: 301 I 301 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 318 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 314 Length of database: 302 Length adjustment: 27 Effective length of query: 287 Effective length of database: 275 Effective search space: 78925 Effective search space used: 78925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate WP_012674541.1 SULAZ_RS03715 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.24847.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24847.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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