Alignments for a candidate for ilvC in Sulfurihydrogenibium azorense Az-Fu1

Align Ketol-acid reductoisomerase (NAD(P)(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; EC 1.1.1.383 (characterized)
to candidate WP_012674932.1 SULAZ_RS00390 ketol-acid reductoisomerase

Query= SwissProt::B4U6I9
         (333 letters)



>NCBI__GCF_000021545.1:WP_012674932.1
          Length = 332

 Score =  521 bits (1341), Expect = e-152
 Identities = 253/332 (76%), Positives = 288/332 (86%)

Query: 1   MAKIYYDEDASLGILAMKTVAIVGYGSQGHAHALNLRDSGIRVIVALDDKSPHRKTAMED 60
           MA IYYDEDASL  L  KTVAI+GYGSQGHAHALNLRDSGI+VIV L   S   + A  +
Sbjct: 1   MANIYYDEDASLDYLKDKTVAIIGYGSQGHAHALNLRDSGIKVIVGLLAGSRSIEKAKAE 60

Query: 61  GFSVYTTSRATQEADVIMILTPDTVQPAVYKECIEPNLTPGKAIAFAHGFNIHFGQIVPP 120
           GF VYT   A + ADV+MILTPDTVQP ++   I PNL  G A+AFAHGFNIHFGQIVPP
Sbjct: 61  GFEVYTPDEAAKRADVVMILTPDTVQPQLFYSAILPNLDEGNALAFAHGFNIHFGQIVPP 120

Query: 121 KDIDVFMVAPKGPGHLVRWMYEEGKGVPALISIHQDATGSCRDIALAYAKGIGATRAGVI 180
             +DVF+VAPKGPGHLVRWMYEEGKGVP L +++QD TG+ R++A+AYAKGIG TRAG+I
Sbjct: 121 AYVDVFLVAPKGPGHLVRWMYEEGKGVPGLFAVYQDFTGNAREVAMAYAKGIGCTRAGLI 180

Query: 181 ETTFREETETDLFGEQAVLCGGATALIKAGFETLVEAGYQPEMAYFECLHELKLIVDLIY 240
           ETTF+EETETDLFGEQAVLCGGATALIKAGFETL+EAGYQPE+AYFECLHELKLIVDLIY
Sbjct: 181 ETTFKEETETDLFGEQAVLCGGATALIKAGFETLIEAGYQPEVAYFECLHELKLIVDLIY 240

Query: 241 QHGIAGMRYSISDTAKYGDVTRGDRVYEAVKPLMKQMLKEIQDGEFAREWILENQANRPV 300
           Q+GI+GMRYSISDTA+YGDVTRG RVYEAVKP+ K++L+EIQ+GEFA+EWILEN ANRP 
Sbjct: 241 QYGISGMRYSISDTARYGDVTRGKRVYEAVKPIYKKILEEIQEGEFAKEWILENVANRPH 300

Query: 301 YNALLNKDKEHLVEKVGKELRQMMPWLSGKEL 332
           +NAL+ KD+EH VEKVGKELR+MMPWL GK L
Sbjct: 301 FNALVKKDEEHPVEKVGKELRKMMPWLGGKSL 332


Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 476
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 332
Length adjustment: 28
Effective length of query: 305
Effective length of database: 304
Effective search space:    92720
Effective search space used:    92720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_012674932.1 SULAZ_RS00390 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.17681.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17681.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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