Alignments for a candidate for asd in Sulfurihydrogenibium azorense Az-Fu1

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate WP_012674944.1 SULAZ_RS08120 aspartate-semialdehyde dehydrogenase

Query= metacyc::MONOMER-6564
         (346 letters)



>NCBI__GCF_000021545.1:WP_012674944.1
          Length = 337

 Score =  369 bits (947), Expect = e-107
 Identities = 186/344 (54%), Positives = 248/344 (72%), Gaps = 8/344 (2%)

Query: 3   RGLHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPE 62
           +  +VA++GATGAVGQ M+K LE+RNF ++ +  L+S+RSAG +V + G +  V+  S +
Sbjct: 2   KSYNVAILGATGAVGQTMIKVLEERNFPINEIRFLASERSAGKEVEYMGVKYKVEAVSED 61

Query: 63  SFEGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHN 122
           SF+G++IALFSAGG  S+  AP A  +GA+VIDN+SAFRMD + PLVVPEVN  D+  H 
Sbjct: 62  SFKGIDIALFSAGGERSKKWAPIAASKGAVVIDNSSAFRMDPDVPLVVPEVNPEDVKWHK 121

Query: 123 GIIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEE 182
           GIIANPNCSTIQMV AL PI K   + ++IV+TYQAVSGAG  A+ +L ++T+A++    
Sbjct: 122 GIIANPNCSTIQMVVALYPIHKVKKIKRIIVATYQAVSGAGATAIADLENETKAVMEGRY 181

Query: 183 IEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCV 242
             P+ +P       + IAFN IP+ID F+ NGYT EEMKMINET+KIMH PD++V+ TCV
Sbjct: 182 YYPQALP-------HHIAFNVIPRIDNFEPNGYTKEEMKMINETRKIMHEPDIKVSPTCV 234

Query: 243 RLPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVF 302
           R+P+  GHSE+V IE      T E+ + +L +APGV ++DDP   +YP+P +  GK+DVF
Sbjct: 235 RVPVYVGHSEAVTIETQL-PITAEEAREILMKAPGVIVEDDPINNVYPVPIEVAGKDDVF 293

Query: 303 VGRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV 346
           VGRIRKD    NG  +W+V DNL KGAA N+VQIAE L K  L+
Sbjct: 294 VGRIRKDAGFENGLSMWIVGDNLRKGAATNAVQIAELLIKYELI 337


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 337
Length adjustment: 29
Effective length of query: 317
Effective length of database: 308
Effective search space:    97636
Effective search space used:    97636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate WP_012674944.1 SULAZ_RS08120 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.26650.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26650.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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