Align acetohydroxy-acid synthase small subunit (EC 2.2.1.6) (characterized)
to candidate WP_012708543.1 NGR_RS21280 acetolactate synthase small subunit
Query= metacyc::MONOMER-11901
(169 letters)
>NCBI__GCF_000018545.1:WP_012708543.1
Length = 190
Score = 128 bits (321), Expect = 6e-35
Identities = 68/170 (40%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 1 MKNTHIISVLVLNKPGVLQRISGLFTRRWYNISSITGGSTD-STDISRMTIVVKGDDKVV 59
+ TH +SVLV N+PGVL R+ GLF+ R YNI S+T T+ +SR+TIV +G V+
Sbjct: 20 LAETHTLSVLVDNEPGVLARVIGLFSGRGYNIESLTVSETEHEAHLSRITIVTRGTPHVL 79
Query: 60 EQVVKQLNKLIEVIKVIDLD-------EEECVERELCLIKIYAPTESSKSQVIQYANIFR 112
EQ+ QL +L+ V +V+DL + VEREL L+K++ E + + ++ A+ FR
Sbjct: 80 EQIKNQLERLVPVHRVVDLTVRAAGLGHDRPVERELALVKVHGSGEH-RVEALRLADAFR 138
Query: 113 GNIVDLSQESLTVQITGDKTKISAFIKLVKPMGIKEISRTGLTALMRGPK 162
+++D + + +ITG +KI FI ++KP+G+ E+ RTG+ A+ RGP+
Sbjct: 139 ASVIDANIDHFVFEITGKPSKIEQFIAIMKPLGLIEVCRTGIAAMNRGPQ 188
Lambda K H
0.317 0.134 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 190
Length adjustment: 19
Effective length of query: 150
Effective length of database: 171
Effective search space: 25650
Effective search space used: 25650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)
Align candidate WP_012708543.1 NGR_RS21280 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.13108.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13108.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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