Alignments for a candidate for argH in Sinorhizobium fredii NGR234

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_012709200.1 NGR_RS24620 argininosuccinate lyase

Query= BRENDA::Q8DVX5
         (460 letters)



>NCBI__GCF_000018545.1:WP_012709200.1
          Length = 467

 Score =  452 bits (1162), Expect = e-131
 Identities = 232/454 (51%), Positives = 304/454 (66%), Gaps = 1/454 (0%)

Query: 2   TTKNHKLWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAA 61
           T  ++++WGGRF +G    +EE  ASI FD+KL   D++GSIAH TML  KGIIS ED  
Sbjct: 8   TKSSNQMWGGRFASGPDAIMEEINASIGFDKKLYAQDIRGSIAHATMLAHKGIISAEDKD 67

Query: 62  TIKAGLEDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDM 121
            I  GLE +L E ++G   F    EDIHMN+E+ L + IGP AG+LHTARSRNDQVA D 
Sbjct: 68  KIVHGLETILSEIESGAFDFSRRLEDIHMNIEARLASLIGPAAGRLHTARSRNDQVALDF 127

Query: 122 HLYLKAKLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFT 181
            L++K +L    + L  L    +D A++H  T+MPG+THLQ AQP++FGHH MAY  MF 
Sbjct: 128 RLWVKEELQRTEKALTGLIGAFLDRAEEHAGTVMPGFTHLQTAQPVTFGHHCMAYVEMFG 187

Query: 182 RDSERFIFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILE 241
           RD  R    ++H D SP+GAAALAGT FPIDR MTA+ +GF EP  NS+D VSDRDF LE
Sbjct: 188 RDRSRVRHAIEHMDESPIGAAALAGTGFPIDRHMTAKALGFREPTRNSIDTVSDRDFALE 247

Query: 242 FLSNASILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSG 301
           FLS ASI   H+SR+ EE++ W + ++ F+ LSD FSTGSSIMPQKKNPD AEL+R K+G
Sbjct: 248 FLSIASIAATHLSRLAEEIVIWSTPQFGFIRLSDAFSTGSSIMPQKKNPDAAELVRAKTG 307

Query: 302 RVYANLFGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMA 361
           R+  +L  LLTVMK LPLAY+KD+QEDKE +FD AE++ +A+  + GM+  M V    M 
Sbjct: 308 RINGSLIALLTVMKGLPLAYSKDMQEDKEQVFDAAESLELAIAAMTGMVRDMTVRADRMK 367

Query: 362 ESTQKDFSNATELADYLASK-GMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDL 420
            +    +S AT+LAD+L  + G+PFR AH + G+ +    + G  L D+ L   Q I+  
Sbjct: 368 AAAGSGYSTATDLADWLVREAGLPFRDAHHVTGRAVALAEQKGCDLADLSLADLQAINPA 427

Query: 421 IEEDVYETLKSHTAVERRHSLGGTGFEQVKWQIA 454
           I + V++ L    +V  R S GGT   +V+ QIA
Sbjct: 428 ITDKVFDVLTVEASVASRTSFGGTAPAEVRKQIA 461


Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 613
Number of extensions: 30
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 467
Length adjustment: 33
Effective length of query: 427
Effective length of database: 434
Effective search space:   185318
Effective search space used:   185318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_012709200.1 NGR_RS24620 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.29280.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29280.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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