Alignments for a candidate for asd in Acidimicrobium ferrooxidans DSM 10331

Align aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate WP_012784201.1 AFER_RS00575 aspartate-semialdehyde dehydrogenase

Query= BRENDA::P9WNX5
         (345 letters)



>NCBI__GCF_000023265.1:WP_012784201.1
          Length = 341

 Score =  347 bits (890), Expect = e-100
 Identities = 191/340 (56%), Positives = 241/340 (70%), Gaps = 8/340 (2%)

Query: 2   GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETAD 61
           GL++G+VGATGQVG VMR ++ ER  P ++VRFFAS+RS G +L F G  +EVED  TAD
Sbjct: 3   GLALGVVGATGQVGSVMRRIVLERGLPIASVRFFASSRSAGTQLDFDGTSVEVEDVATAD 62

Query: 62  PSGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRRP 121
           PSGLD+ALFS G++ ++  APRFAA+G  V+DNSSA+R DP VPLVV+EVN E      P
Sbjct: 63  PSGLDVALFSIGASAAERYAPRFAASGCVVVDNSSAFRMDPAVPLVVAEVNPEA-IEAMP 121

Query: 122 KGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGA 181
           K I+ANPNCTTM A+  L  +   A L R++ S+YQA SG+G  GVAELA Q      G 
Sbjct: 122 KRIVANPNCTTMVAVGALAAIRRVAGLRRVIASTYQAASGAGRTGVAELAAQLSR--PGL 179

Query: 182 EQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILGIPDL 241
           E L +DG A++F  P  + AP+  NVVPLAGSLV D   +T E++K   ESRKILG+ DL
Sbjct: 180 EALTFDGKAVDFGTPAVFPAPLGANVVPLAGSLVGD---DTTEERKFVNESRKILGMEDL 236

Query: 242 LVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGATGVQLVDVPTPLAAAGVDESL 301
            V  TCVRVPVFTGH++S+ AE  +P+     R  L+ A G+QL D+PTPL AAG DE L
Sbjct: 237 RVGATCVRVPVFTGHAVSVVAECERPVDLAAVRAALEAAPGLQLADLPTPLDAAGRDEVL 296

Query: 302 VGRIRRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELL 341
           VGR+R    V +  G+A FV+GDNLRKGAALN +Q+AEL+
Sbjct: 297 VGRVRASDVVDN--GVAFFVAGDNLRKGAALNAVQLAELV 334


Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 381
Number of extensions: 18
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 341
Length adjustment: 29
Effective length of query: 316
Effective length of database: 312
Effective search space:    98592
Effective search space used:    98592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_012784201.1 AFER_RS00575 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.18678.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18678.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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