Alignments for a candidate for thrC in Thermomonospora curvata DSM 43183

Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate WP_012851176.1 TCUR_RS03920 threonine synthase

Query= curated2:Q58860
         (405 letters)



>NCBI__GCF_000024385.1:WP_012851176.1
          Length = 413

 Score =  254 bits (650), Expect = 2e-72
 Identities = 143/381 (37%), Positives = 223/381 (58%), Gaps = 12/381 (3%)

Query: 5   CIKCGKTYDVDEIIYTCE-CGGLLEIIYDYEEIKDKVSEEKLRKREIGVWRYLEYLPVKD 63
           C +CG++Y++    Y CE C G LEI YD+      V+ E +      +WRY   LPV  
Sbjct: 16  CRECGQSYELGPR-YACEQCFGPLEIAYDFAG----VTRESIESGPRNIWRYRGLLPVPA 70

Query: 64  ESKIVSLCEGG-TPLYRCNNLEKELGIKELYVKNEGANPTGSFKDRGMTVGVTRANELGV 122
             +     E G T L R ++L + LG+++L+VK++  NPT SFKDR + V +  A ELG 
Sbjct: 71  NVESTPNTEPGFTRLVRADHLAESLGMQKLWVKDDSGNPTHSFKDRVVAVALAAARELGF 130

Query: 123 EVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKVIQVKGNFDDA 182
           +V+ C STGN + ++AA +AR+G +  V +P   +   K+     YG   + V+GN+DD 
Sbjct: 131 KVLACPSTGNLANAVAAAAARAGIRSAVFVP-ADLEQQKIITTAVYGGTFVTVRGNYDDV 189

Query: 183 LDMVKQLAKEKLIYLLNSIN--PFRLEGQKTIAFEICDQLNWQVPDRVIVPVGNAGNISA 240
             +  ++A E+  +   ++N  P+  EG KT+ +EI +QL W++PD++++PV +   ++ 
Sbjct: 190 NRLASEIAGEQEDWAFVNVNVRPYYAEGSKTLGYEIAEQLGWRLPDQIVIPVASGSQLTK 249

Query: 241 IWKGFKEFEITGIIDELP-KMTGIQADGAKPIVEAFRKRAKDIIPYKNPETIATAIRIGN 299
           I K F+EF   G++++ P K+ G QA G  P+  AF K   D++    P+TIA ++ IGN
Sbjct: 250 IDKAFQEFIKLGLVEDKPYKVFGAQATGCSPVAAAF-KAGHDVVRPVKPDTIAKSLAIGN 308

Query: 300 PVNAPKALDAIYSSGGYAEAVTDEEIVEAQKLLARKEGIFVEPASASSIAGLKKLLEEGI 359
           P + P  LD +  +GG  E V+D E+VE  +LLA  EGIF E A   ++A L+KL+  G 
Sbjct: 309 PADGPYVLDVVRRTGGAVEDVSDPEVVEGIRLLAATEGIFAETAGGVTVACLRKLIASGA 368

Query: 360 IDRDERIVCITTGHGLKDPDA 380
           +D +   V I +G GLK  DA
Sbjct: 369 LDPEAETVIINSGDGLKTLDA 389


Lambda     K      H
   0.317    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 455
Number of extensions: 27
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 413
Length adjustment: 31
Effective length of query: 374
Effective length of database: 382
Effective search space:   142868
Effective search space used:   142868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_012851176.1 TCUR_RS03920 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.17019.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17019.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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