Alignments for a candidate for serA in Thermomonospora curvata DSM 43183

Align phosphoglycerate dehydrogenase (EC 1.1.1.95) (characterized)
to candidate WP_012853865.1 TCUR_RS17475 phosphoglycerate dehydrogenase

Query= BRENDA::Q9Z564
         (529 letters)



>NCBI__GCF_000024385.1:WP_012853865.1
          Length = 531

 Score =  734 bits (1895), Expect = 0.0
 Identities = 373/526 (70%), Positives = 444/526 (84%)

Query: 3   SKPVVLIAEELSPATVDALGPDFEIRHCNGADRAELLPAIADVDAILVRSATKVDAEAVA 62
           SKPVVL+AEELSPA ++ L  DF++RH +G+DR+ LLPA+A+VDA++VRSATKV+AE   
Sbjct: 2   SKPVVLVAEELSPAGIELLAADFDVRHVDGSDRSALLPAVAEVDALIVRSATKVNAEVFE 61

Query: 63  AAKKLKVVARAGVGLDNVDVSAATKAGVMVVNAPTSNIVTAAELACGLIVATARNIPQAN 122
            AKKL+VVARAGVGLDNVDV AATKAGVMVVNAPTSNIVTAAE A  L++ATARN+PQA+
Sbjct: 62  HAKKLRVVARAGVGLDNVDVEAATKAGVMVVNAPTSNIVTAAEHAIALLLATARNVPQAH 121

Query: 123 AALKNGEWKRSKYTGVELAEKTLGVVGLGRIGALVAQRMSAFGMKVVAYDPYVQPARAAQ 182
           AALK GEWKRSKYTGVEL  KT+GV+GLGRIG LVAQR++AF M+++AYDPYVQ ARAAQ
Sbjct: 122 AALKQGEWKRSKYTGVELQGKTVGVLGLGRIGVLVAQRLAAFDMEIIAYDPYVQAARAAQ 181

Query: 183 MGVKVLSLDELLEVSDFITVHLPKTPETLGLIGDEALRKVKPSVRIVNAARGGIVDEEAL 242
           +GVK++SL+ELL  SDFITVHLPKTPET+GLIGD+ L  VKPSVRI+NAARGGIVDE AL
Sbjct: 182 LGVKLVSLEELLRESDFITVHLPKTPETIGLIGDKELHLVKPSVRIINAARGGIVDENAL 241

Query: 243 YSALKEGRVAGAGLDVYAKEPCTDSPLFEFDQVVATPHLGASTDEAQEKAGIAVAKSVRL 302
            +ALKEGRVAGAGLDV+A EPCTDSPLF  D VV TPHLGAST EAQEKAG  VA+SV+L
Sbjct: 242 EAALKEGRVAGAGLDVFANEPCTDSPLFHHDNVVVTPHLGASTHEAQEKAGTQVARSVKL 301

Query: 303 ALAGELVPDAVNVQGGVIAEDVKPGLPLAERLGRIFTALAGEVAVRLDVEVYGEITQHDV 362
           AL+GE VPDAVNVQGG +AEDVKPGLPLAE+LGRIFTALAG V VRL+V V GEIT HDV
Sbjct: 302 ALSGEFVPDAVNVQGGAVAEDVKPGLPLAEKLGRIFTALAGGVPVRLEVVVRGEITAHDV 361

Query: 363 KVLELSALKGVFEDVVDETVSYVNAPLFAQERGVEVRLTTSSESPEHRNVVIVRGTLSDG 422
           KVLEL+ALKGVF DVV++ V++VNAPL A++RGVEV LTT+ +SP+ RNVV V+GT++DG
Sbjct: 362 KVLELAALKGVFLDVVEDAVTFVNAPLLARDRGVEVTLTTTEDSPDWRNVVQVKGTMTDG 421

Query: 423 EEVSVSGTLAGPKHLQKIVAIGEYDVDLALADHMVVLRYEDRPGVVGTVGRIIGEAGLNI 482
             VSVSGTL GPKH+++IV I  YD++L  A+HM    Y DRPG+VG VGR++G+A +NI
Sbjct: 422 TVVSVSGTLTGPKHIERIVEINGYDMELVPAEHMAFFSYTDRPGIVGVVGRLLGDAQINI 481

Query: 483 AGMQVARATVGGEALAVLTVDDTVPSGVLAEVAAEIGATSARSVNL 528
           A MQV R++ GG+AL  LTVD  +   +L  +  EIGA   R V+L
Sbjct: 482 ASMQVGRSSKGGKALIALTVDSAIGPDLLETIRTEIGADMGRRVDL 527


Lambda     K      H
   0.315    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 870
Number of extensions: 31
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 531
Length adjustment: 35
Effective length of query: 494
Effective length of database: 496
Effective search space:   245024
Effective search space used:   245024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_012853865.1 TCUR_RS17475 (phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.28996.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28996.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.