Alignments for a candidate for asp-kinase in Thermomonospora curvata DSM 43183

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_012855184.1 TCUR_RS23935 aspartate kinase

Query= BRENDA::P9WPX3
         (421 letters)



>NCBI__GCF_000024385.1:WP_012855184.1
          Length = 422

 Score =  577 bits (1487), Expect = e-169
 Identities = 293/422 (69%), Positives = 350/422 (82%), Gaps = 1/422 (0%)

Query: 1   MALVVQKYGGSSVADAERIRRVAERIVATKKQGNDVVVVVSAMGDTTDDLLDLAQQVCPA 60
           MALVVQKYGGSSVADAE ++RVA+RIVATKK GN VVVVVSAMGDTTD+L+DLA+QV P 
Sbjct: 1   MALVVQKYGGSSVADAECVKRVAQRIVATKKAGNSVVVVVSAMGDTTDELIDLAEQVSPL 60

Query: 61  PPPRELDMLLTAGERISNALVAMAIESLGAHARSFTGSQAGVITTGTHGNAKIIDVTPGR 120
           PP RELDMLLTAGERIS AL+AMAI +LG  ARSFTGSQAGVIT G+HG A+IIDVTPGR
Sbjct: 61  PPARELDMLLTAGERISMALLAMAIANLGHEARSFTGSQAGVITDGSHGKARIIDVTPGR 120

Query: 121 LQTALEEGRVVLVAGFQGVSQDTKDVTTLGRGGSDTTAVAMAAALGADVCEIYTDVDGIF 180
           +++AL+EG + +VAGFQGVSQDTKD+TTLGRGGSDTTAVA+AAALGADVCEIYTDVDG+F
Sbjct: 121 IRSALDEGAIAIVAGFQGVSQDTKDITTLGRGGSDTTAVALAAALGADVCEIYTDVDGVF 180

Query: 181 SADPRIVRNARKLDTVTFEEMLEMAACGAKVLMLRCVEYARRHNIPVHVRSSYSDRPGTV 240
           +ADPRIV  AR++  +++EEMLEMAACGAK+L LRCVEYARR++IP+HVRSS+S +PGT 
Sbjct: 181 TADPRIVPTARRIPRISYEEMLEMAACGAKILHLRCVEYARRYDIPIHVRSSFSQKPGTW 240

Query: 241 VVGSIKDVPMEDPILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNV 300
           +  S +   ME PI++GVAHDRSEAKVT+VG+PD  G AA +F  ++DA +N+DM++QNV
Sbjct: 241 ITDSTEGSEMEQPIISGVAHDRSEAKVTVVGVPDKVGVAATIFSVLSDAGINLDMIVQNV 300

Query: 301 SKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPGV 360
           S    G+TDI+FT     G  A+  L+  +++IGF  LLYDD IGKVSLIGAGMRSHPGV
Sbjct: 301 SAAATGRTDISFTLPGTDGQTALTALNKAKDQIGFESLLYDDRIGKVSLIGAGMRSHPGV 360

Query: 361 TATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGLGGDE-EATVYAGT 419
           TA F  ALA  GVNIE+ISTSEIRISV+    +++ AV A H AF L  D+ EA VY GT
Sbjct: 361 TAKFFTALADAGVNIEMISTSEIRISVIVSQDDVEAAVNAAHRAFDLDADQIEAVVYGGT 420

Query: 420 GR 421
           GR
Sbjct: 421 GR 422


Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 560
Number of extensions: 21
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 422
Length adjustment: 32
Effective length of query: 389
Effective length of database: 390
Effective search space:   151710
Effective search space used:   151710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012855184.1 TCUR_RS23935 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.1404.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1404.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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