Alignments for a candidate for asd in Thermomonospora curvata DSM 43183

Align aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate WP_012855185.1 TCUR_RS23940 aspartate-semialdehyde dehydrogenase

Query= BRENDA::Q8KQ27
         (354 letters)



>NCBI__GCF_000024385.1:WP_012855185.1
          Length = 351

 Score =  437 bits (1124), Expect = e-127
 Identities = 229/352 (65%), Positives = 274/352 (77%), Gaps = 7/352 (1%)

Query: 3   PVLALVGATGAVGTVMIDIINNRETVPWGEIRLIASARSAGKKLTVRGEELTVIELTAEA 62
           P LA+VGATGAVG+VM+++++ RE V +GEIRL+AS RSAGKKLTVRGE+L V+ L  E 
Sbjct: 4   PTLAVVGATGAVGSVMLELLSTREDV-YGEIRLVASPRSAGKKLTVRGEQLEVLALAPEV 62

Query: 63  FDGVDVAMFDVPDEISAEWAPVAAARGAVAVDNSGAFRMDDDVPLVVPEVNADKVGERPR 122
           F+GVD+AMFD PDE+S +WAP+AA  GAVAVDNSGAFRMD DVPLVVPEVNA+    RP+
Sbjct: 63  FEGVDIAMFDTPDEVSKQWAPIAAEHGAVAVDNSGAFRMDPDVPLVVPEVNAEAARNRPK 122

Query: 123 GIIANPNCTTLSMMAALGALHREFELKELVVASYQAVSGAGKEGVDRLYAELEAVAG-KP 181
           GII+NPNCTTLSM+ A+GALHR + L+ELVVASYQA SGAG+ G+D LY +LE V G + 
Sbjct: 123 GIISNPNCTTLSMIVAMGALHRRYGLRELVVASYQAASGAGQAGIDTLYDQLEKVGGNRE 182

Query: 182 VGVSAGDVRKTLEAAGLSISDSPFPAPLAFNVVPSAGSYKGDGWYSEELKVRNESRKILG 241
           +GV AGDVR+   A G  +   PFPAPLA NVVP AGS K DGW SEE+KVRNESRKILG
Sbjct: 183 LGVRAGDVRR---AIGDDL--GPFPAPLAMNVVPWAGSLKEDGWTSEEMKVRNESRKILG 237

Query: 242 IPDLKVSATCVRVPVVTTHSLAVHATFAREVTVEEAHKVFEAQPTIVLVDDPENGVFPTP 301
           +P+L+VSATCVRVPVVTTHSLAVHA F + V   EA +V  A P +VLVDDP  G FPTP
Sbjct: 238 LPNLRVSATCVRVPVVTTHSLAVHAVFDQPVDQREAQEVLAAAPGVVLVDDPAAGEFPTP 297

Query: 302 AEVVGEDPTYVGRVRQALDFPNTLDFLRVRGQPAQGAAAEHLRDAETLAPQL 353
           A+VVG DPT+VGRVR++LD PN LD         +GAA    + AE +A +L
Sbjct: 298 ADVVGTDPTWVGRVRRSLDDPNALDLFLCGDNLRKGAALNTAQIAELVAAEL 349


Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 446
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 351
Length adjustment: 29
Effective length of query: 325
Effective length of database: 322
Effective search space:   104650
Effective search space used:   104650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_012855185.1 TCUR_RS23940 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.7070.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7070.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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