Alignments for a candidate for carA in Ferroglobus placidus DSM 10642

Align Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_012964845.1 FERP_RS01625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P25993
         (364 letters)



>NCBI__GCF_000025505.1:WP_012964845.1
          Length = 358

 Score =  335 bits (858), Expect = 1e-96
 Identities = 171/354 (48%), Positives = 234/354 (66%), Gaps = 12/354 (3%)

Query: 5   LVLENGAVFEGEAFGSLEHNMGEVVFNTGMTGYQEILSDPSYCGQIVTLTYPLIGNYGIN 64
           L LE+G   EG+AFG L    GE+VFNT MTGY E L+DPSY GQI+ +TYPLIGNYG+ 
Sbjct: 6   LALEDGTFVEGKAFGELREAEGELVFNTSMTGYVEALTDPSYKGQILMMTYPLIGNYGVC 65

Query: 65  RDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMIRTAG 124
           R+DFES    V+G +++ELC+ P+NWRS  T+DE LK   IPG++G+DTR LT+ +R  G
Sbjct: 66  REDFESDGVKVEGFVVRELCKEPNNWRSEMTVDELLKEYGIPGIEGVDTRMLTKKLRIYG 125

Query: 125 ALKGTFASSDEDIEAVLKR------LNETELPRNQVSQVSAKTAYPSPGRGK-RIVLVDF 177
           ++K      D   E  +++      ++E +L    V +V  K        GK R+ L+D 
Sbjct: 126 SMKAYIGIGDVTKEEAIEKARAQPSISEIDL----VDKVCVKEPRVVGEGGKYRVALIDC 181

Query: 178 GMKHGILRELNKRKCDVIVVPYNITAEEVLQLKPDGIMLSNGPGDPKDVPEAIEMIKGVL 237
           G+K  I+R+L KR  +V + PY+  AE++L+   DG+ +SNGPGDP  V   IE IK + 
Sbjct: 182 GVKRSIVRQLVKRGVEVTLFPYDYPAEKILEEDFDGVFISNGPGDPARVKPTIETIKKLA 241

Query: 238 GKVPLFGICLGHQLFALACGANTEKMKFGHRGSNHPVKELATGKVALTSQNHGYTVSSIS 297
           GK+P+ GICLGHQL ALA GA T K+KFGH GSNHPVK+  TG+V ++SQNH + V   +
Sbjct: 242 GKMPMAGICLGHQLIALAFGAKTFKLKFGHHGSNHPVKDFETGRVFISSQNHNFAVDEKT 301

Query: 298 KTE-LEVTHIAINDDTIEGLKHKTLPAFTVQYHPEASPGPEDANHLFDRFIEMI 350
             + L VT I +ND T+EG+ H+ +P  +VQYHPEA PGP D    FD F++++
Sbjct: 302 LPKGLRVTQINLNDYTVEGMVHEEIPLISVQYHPEAGPGPHDTYFFFDSFVDLL 355


Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 401
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 358
Length adjustment: 29
Effective length of query: 335
Effective length of database: 329
Effective search space:   110215
Effective search space used:   110215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_012964845.1 FERP_RS01625 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.20445.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20445.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.