Alignments for a candidate for argB in Ferroglobus placidus DSM 10642

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_012966700.1 FERP_RS11200 acetylglutamate kinase

Query= BRENDA::Q9X2A4
         (282 letters)



>NCBI__GCF_000025505.1:WP_012966700.1
          Length = 290

 Score =  294 bits (753), Expect = 1e-84
 Identities = 151/288 (52%), Positives = 212/288 (73%), Gaps = 13/288 (4%)

Query: 3   IDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGG 62
           ++ V  L+EALPYI+EF+GK  VIK GG AM  E   ++ ++D+ILL + GIKPI+VHGG
Sbjct: 1   MEKVKTLVEALPYIREFHGKVMVIKIGGHAMVNEKILESAVRDVILLYFVGIKPIVVHGG 60

Query: 63  GPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICG 122
           GP IS+ M+ LGI+P F +G RVTDE+T+E+V+MVL GKIN +IV     +GG+AVG+ G
Sbjct: 61  GPEISEKMERLGIKPKFVDGLRVTDEETIEVVQMVLDGKINSKIVSLFIKNGGKAVGMSG 120

Query: 123 KDSKLIVAEK---ETKHG------DIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGED 173
           KD  L+VA+K   + K G      D+GYVG+ + VNPEIL  LI+N +IPV++PV +  +
Sbjct: 121 KDGLLVVAKKKKVKKKIGDSEVELDLGYVGETEIVNPEILKILIDNGFIPVVSPVAVDLN 180

Query: 174 GHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----GKLISTLTPDEAEELIRDGT 229
           G+ YN+NADT A +IA +L A+KLI+LTDV G+L+D      +IS ++  E EE+++ G 
Sbjct: 181 GNIYNMNADTVAGDIAAALKAKKLIILTDVPGILRDVNDPNSVISKISLKELEEMLKKGE 240

Query: 230 VTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277
           ++GGMIPK E  + A++GGV   HIING +EHAILLE+F+++GIGTM+
Sbjct: 241 LSGGMIPKAEAIIKALKGGVERGHIINGSVEHAILLELFTKEGIGTMV 288


Lambda     K      H
   0.318    0.140    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 328
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 290
Length adjustment: 26
Effective length of query: 256
Effective length of database: 264
Effective search space:    67584
Effective search space used:    67584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_012966700.1 FERP_RS11200 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.10163.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10163.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.