Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate WP_012970168.1 ALVIN_RS04705 acetolactate synthase small subunit
Query= BRENDA::P00894 (163 letters) >NCBI__GCF_000025485.1:WP_012970168.1 Length = 163 Score = 187 bits (476), Expect = 5e-53 Identities = 93/160 (58%), Positives = 128/160 (80%), Gaps = 1/160 (0%) Query: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 MR I++VLLENE+GALSRV GLFS RGYNIESLTVAPTDDPTLSRMT+ T G+++++EQI Sbjct: 1 MRHIIAVLLENEAGALSRVAGLFSARGYNIESLTVAPTDDPTLSRMTLVTTGNDEIVEQI 60 Query: 61 EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 +KQL+KL+D +++ +L +G H+ERE+M+VK++A R+E+KR +IFR +IIDVT Y Sbjct: 61 KKQLNKLIDTVKLVDLSEGDHIEREMMMVKVRAERPDREELKRLVDIFRAKIIDVTDVSY 120 Query: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDK 160 ++L G S KLDAF+ ++ + I+EV RSG G++RG K Sbjct: 121 VIELTGASRKLDAFIDALPE-GLIIEVVRSGPTGIARGAK 159 Lambda K H 0.318 0.136 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 117 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 163 Length of database: 163 Length adjustment: 18 Effective length of query: 145 Effective length of database: 145 Effective search space: 21025 Effective search space used: 21025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)
Align candidate WP_012970168.1 ALVIN_RS04705 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.5293.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5293.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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