Alignments for a candidate for argE in Allochromatium vinosum DSM 180

Align Acetylornithine deacetylase; AO; Acetylornithinase; N-acetylornithinase; NAO; EC 3.5.1.16 (characterized)
to candidate WP_012972003.1 ALVIN_RS14120 acetylornithine deacetylase

Query= SwissProt::P23908
         (383 letters)



>NCBI__GCF_000025485.1:WP_012972003.1
          Length = 390

 Score =  366 bits (939), Expect = e-106
 Identities = 194/384 (50%), Positives = 247/384 (64%), Gaps = 5/384 (1%)

Query: 1   MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRN 60
           M  + P    +   LI T S+S+   A D SN  L+TLLADW +  GF  E+ PVPG   
Sbjct: 1   MTTQSPSLKTMLEGLIGTLSVSSVTPAFDHSNEPLVTLLADWLESAGFRAEILPVPGHPG 60

Query: 61  KFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFI 120
           KFN+L ++G G GGL+L+GHTDTVPFD   WT DP  LTE DG+ YGLGT+DMK FFA  
Sbjct: 61  KFNLLGTLGSGPGGLVLSGHTDTVPFDAPLWTHDPLKLTEADGRYYGLGTSDMKSFFALA 120

Query: 121 LDALRDVDVTKLKKPLYILATADEETSMAGARYFAETTALRP--DCAIIGEPTSLQPVRA 178
           L+A R    + LK PL ILATADEE++M GAR  A  TA RP    A+IGEPT+L+PVR 
Sbjct: 121 LEAARAFRASDLKCPLMILATADEESAMHGAR--ALVTAGRPLGRHALIGEPTNLRPVRL 178

Query: 179 HKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPT 238
           HKG +  ++R+ G+SGH+SDP+ G NA++ MH+ +  IL  R  L++ + + AF VPYPT
Sbjct: 179 HKGVMGESVRLVGRSGHASDPSLGNNALDGMHEVMSVILDWRAELQQAHRHPAFPVPYPT 238

Query: 239 LNLGHIHGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDEL 298
           +NLGHIHGGD  NRIC  CELH+D+R LPGM   +L   L + +A V  R   + +V+ L
Sbjct: 239 VNLGHIHGGDNPNRICGECELHLDLRVLPGMDPADLRNALAERVAGVGRRRGLQWSVEPL 298

Query: 299 HPPIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEAPFIQTL-CPTLVLGPGSINQAHQP 357
             PIP  E P    +V   E L G   E V++ TE PF+  L   TL+LGPG I QAHQP
Sbjct: 299 FAPIPPAETPTTAAIVRACESLTGHAAEAVSFGTEMPFLNQLGMDTLILGPGDIAQAHQP 358

Query: 358 DEYLETRFIKPTRELITQVIHHFC 381
           DE+L    I PT EL+  +I  FC
Sbjct: 359 DEFLALDRIPPTLELLRALIRRFC 382


Lambda     K      H
   0.320    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 475
Number of extensions: 22
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 390
Length adjustment: 30
Effective length of query: 353
Effective length of database: 360
Effective search space:   127080
Effective search space used:   127080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_012972003.1 ALVIN_RS14120 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.6644.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6644.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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