Alignments for a candidate for carA in Azospirillum sp. B510

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_012973676.1 AZL_RS05565 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000010725.1:WP_012973676.1
          Length = 390

 Score =  409 bits (1052), Expect = e-119
 Identities = 206/380 (54%), Positives = 265/380 (69%), Gaps = 10/380 (2%)

Query: 2   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
           + + +LVL DGT F GR IGATG +VGEV FNTSMTGYQEILTDPSY+ QI+T T+PHIG
Sbjct: 12  VHTGVLVLADGTVFRGRGIGATGDSVGEVCFNTSMTGYQEILTDPSYAGQIITFTFPHIG 71

Query: 62  NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
           N G N  D E+    A+GL++R      SN+R T  L  +LK + +V +A +DTR+LTR 
Sbjct: 72  NTGANAEDIETITPAARGLILRADITDPSNWRATRHLDDWLKSYGLVGLAGVDTRRLTRR 131

Query: 122 LREKGAQNGCIIAGDNPDAALALE----KARAFPGLNGMDLAKEVTTAEAYSWTQGSWTL 177
           +R+ GA NG  +    PD    ++    KA+ +PGL GMDLAK+V+  + Y WT+ +WT+
Sbjct: 132 IRDLGAPNG--VVAHAPDGRFDIDALVAKAKGWPGLEGMDLAKDVSCRQTYDWTEAAWTI 189

Query: 178 TGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIF 237
            GG      +D+  +HVVA D+GAKRNILR L   GC++T+VP+  S EDV++  PDG+F
Sbjct: 190 GGGYAT---QDKPRYHVVAIDYGAKRNILRCLAAAGCKVTVVPSTASVEDVMRHQPDGVF 246

Query: 238 LSNGPGDPAPC-DYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHP 296
           LSNGPGDPA   +YA+  I+  L+T +P+FGICLGHQ+L+LA GAKT KM+ GH G NHP
Sbjct: 247 LSNGPGDPAATGEYAVPTIKGLLDTGVPMFGICLGHQMLSLALGAKTTKMQQGHRGANHP 306

Query: 297 VKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
           VKD+    V IT+QNHGF V   TLPA+  VTH SLFDGT +GI    KP FS Q HPEA
Sbjct: 307 VKDLVSGRVEITSQNHGFVVVPETLPADAEVTHVSLFDGTNEGIRLKGKPVFSVQYHPEA 366

Query: 357 SPGPHDAAPLFDHFIELIEQ 376
           SPGP D+  LFD F++LI +
Sbjct: 367 SPGPQDSHYLFDRFVQLIAE 386


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 483
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 390
Length adjustment: 30
Effective length of query: 352
Effective length of database: 360
Effective search space:   126720
Effective search space used:   126720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012973676.1 AZL_RS05565 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.14228.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14228.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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