Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_012977655.1 AZL_RS27430 dihydroxy-acid dehydratase
Query= SwissProt::P55186
(617 letters)
>NCBI__GCF_000010725.1:WP_012977655.1
Length = 621
Score = 967 bits (2501), Expect = 0.0
Identities = 479/615 (77%), Positives = 531/615 (86%)
Query: 1 MPPYRSRTTTHGRNMAGARGLWRATGMKDEDFGKPIIAVANSFTQFVPGHVHLKDLGQLV 60
MP YRSRT+THGRNMAGARGLWRATGMKD DFGKPIIA+ANSFTQFVPGHVHLKDLGQLV
Sbjct: 1 MPHYRSRTSTHGRNMAGARGLWRATGMKDGDFGKPIIAIANSFTQFVPGHVHLKDLGQLV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIADSVEYMVNAHCADAIVCIS 120
AREIE AGGVAKEFNTIAVDDGIAMGHGGMLYSLPSR+LIAD+VEYM NAHCADA+VCIS
Sbjct: 61 AREIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADAVEYMANAHCADALVCIS 120
Query: 121 NCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKVTVKGKIRALDLVDAMVVAADDSYSDEE 180
NCDKITPGMLMAAMRLNIP VFVSGGPMEAGKV +GK +A+DL+DAMV AAD + SDEE
Sbjct: 121 NCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVKWRGKTKAVDLIDAMVAAADPTVSDEE 180
Query: 181 VEAIEKAACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADREALFKEAGRVVV 240
+E+ +CPTCGSCSGMFTANSMNCLTEALGLSLPGNG++LATHADR+ LF AGR+ V
Sbjct: 181 AAEMERGSCPTCGSCSGMFTANSMNCLTEALGLSLPGNGTILATHADRKDLFLAAGRLAV 240
Query: 241 DLCQRWYEQEDATALPRGIATRAAFENAMSLDIAMGGSTNTVLHLLAAAHEGGIDFSMAD 300
DLC+RWY++EDA+ALPRGIAT+AAFENAM+LDIAMGGSTNTVLH+LAAA EGGIDF+MAD
Sbjct: 241 DLCRRWYQEEDASALPRGIATKAAFENAMTLDIAMGGSTNTVLHILAAAQEGGIDFTMAD 300
Query: 301 IDRLSRHVPCLSKVAPAKSDVHMEDVHRAGGVMAILGELERGGLIDASQPTVHAPTMGEA 360
IDRLSR VP + KVAPA SDVH+EDVHRAGG+ ILGEL+R GL++ PTVHAP++GEA
Sbjct: 301 IDRLSRRVPNVCKVAPAVSDVHIEDVHRAGGIFGILGELDRAGLLNRDTPTVHAPSLGEA 360
Query: 361 LARWDIGRTNSQIAHEFFKAAPGGKPTQVAFSQAARWEELDLDRENGVIRSVEHPFSKDG 420
L RWD+ RT Q H ++AAPGG PT V FSQ RW ELDLDRE GVIR E FS+DG
Sbjct: 361 LDRWDVMRTQDQAVHTLYRAAPGGIPTVVPFSQERRWPELDLDREKGVIRKTESAFSQDG 420
Query: 421 GLAVLFGNLAPEGCIVKTAGVDESILTFRGTARVFESQDAAVSGILGGQVKAGEVVVIRY 480
GLAVL+GN+A GCIVKTAGVD S L F G ARVFESQD AV+GILG VKAGEVVVIRY
Sbjct: 421 GLAVLYGNIAESGCIVKTAGVDASNLVFAGPARVFESQDDAVAGILGDVVKAGEVVVIRY 480
Query: 481 EGPKGGPGMQEMLYPTTYLKSKGLGAACALVTDGRFSGGTSGLSIGHVSPEAGEGGLIAL 540
EGP+GGPGMQEMLYPT+YLKSKGLG ACAL+TDGRFSGGTSGLSIGHVSPEA +GG I L
Sbjct: 481 EGPRGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAAQGGAIGL 540
Query: 541 VETGDPILIDIPTRGITLEVSDAVLAARREAQLARGKDAWTPLNRKRDLTPALRAYAAMT 600
VE GD I IDIP R I L + D L RR+A A+G D W P+ R R ++PALRAYAAMT
Sbjct: 541 VENGDRIEIDIPNRIIRLAIDDQELQRRRDAMNAKGVDGWKPVARDRVVSPALRAYAAMT 600
Query: 601 TNAARGAVRDVSQIE 615
T+A RGAVRDVSQ+E
Sbjct: 601 TSADRGAVRDVSQLE 615
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1420
Number of extensions: 58
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 621
Length adjustment: 37
Effective length of query: 580
Effective length of database: 584
Effective search space: 338720
Effective search space used: 338720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate WP_012977655.1 AZL_RS27430 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.1230.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1230.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.