Alignments for a candidate for hisH in Thermocrinis albus DSM 14484

Align imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) (characterized)
to candidate WP_012992061.1 THAL_RS05215 imidazole glycerol phosphate synthase subunit HisH

Query= BRENDA::Q5NMD4
         (213 letters)



>NCBI__GCF_000025605.1:WP_012992061.1
          Length = 204

 Score =  157 bits (398), Expect = 1e-43
 Identities = 94/206 (45%), Positives = 132/206 (64%), Gaps = 17/206 (8%)

Query: 9   VALIDYGAGNLRSVANALLASGLARENLVVTANPDEVLQADRVVLPGVGAFASCMQALKA 68
           VAL+DYG GNL SV  AL   GL    +V T++PD + +AD +VLPGVGAF   ++ LKA
Sbjct: 3   VALVDYGMGNLLSVRKALQVVGL---EVVQTSDPDFLPEADAIVLPGVGAFRDAVRNLKA 59

Query: 69  --IPDMVPALEKAVLEKGRPFLGICVGMQLLADQGEEYGVHQGLGWIKGKVTPLRPNDPS 126
             I D +    K  +E+G+PFLGIC+G+QLL ++  E+G  +GLG ++G+V  L P+  +
Sbjct: 60  SGIWDQL----KKQIEEGKPFLGICLGLQLLFERSYEFGEEEGLGVLRGEVV-LLPH--T 112

Query: 127 CKVPHMGWNQIGLTTDSHPLLRA----GEAYFLHSYAFVPEDESTLLATTEHGGLVTAAV 182
            +VPH+GWNQI    DS P+L         YF+HSY  VP+D S +L  T++G    ++V
Sbjct: 113 VRVPHIGWNQIFRKKDS-PVLEGVPDGAYLYFVHSYHVVPKDPSCILTVTDYGIDFVSSV 171

Query: 183 GRDNIMGVQFHPEKSQSYGLEFLSRF 208
             +N++ VQFHPEKSQ  GL  L  +
Sbjct: 172 EWENVLAVQFHPEKSQKMGLRILKNW 197


Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 165
Number of extensions: 15
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 204
Length adjustment: 21
Effective length of query: 192
Effective length of database: 183
Effective search space:    35136
Effective search space used:    35136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_012992061.1 THAL_RS05215 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.24089.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24089.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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