Alignments for a candidate for metE in Thermocrinis albus DSM 14484

Align 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase (EC 2.1.1.14) (characterized)
to candidate WP_012992509.1 THAL_RS07485 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase

Query= BRENDA::Q9X112
         (734 letters)



>NCBI__GCF_000025605.1:WP_012992509.1
          Length = 760

 Score =  956 bits (2470), Expect = 0.0
 Identities = 466/752 (61%), Positives = 589/752 (78%), Gaps = 23/752 (3%)

Query: 1   MKAYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEMNKLRMYMVENYRKNVDVIPSNE 60
           M+  A+GFPK+G++REFK  LE+FWKGKITEE   E MN+LR +MV+NYR+ VD+ PSNE
Sbjct: 1   MRTLAYGFPKLGDRREFKSLLENFWKGKITEEDLTEGMNRLRDWMVDNYRQYVDLFPSNE 60

Query: 61  LSYYDFVLDTAVMVGAVPERFGEYRGLSTYFDMARGGKALEMTKFFNTNYHYLVPEIETE 120
           LSYYDFVLDTAVMVGA+P RFG+Y+GLSTYF+MARG +ALEMTK+FNTNYHYLVPE+ET 
Sbjct: 61  LSYYDFVLDTAVMVGAIPSRFGKYQGLSTYFEMARGKRALEMTKYFNTNYHYLVPELETP 120

Query: 121 EFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEWIRRP------------N 168
            F+LL+N PLEDY +F  KGI+T P ++ P+TFL LSK        P            +
Sbjct: 121 NFHLLKNFPLEDYNYFSQKGIDTLPRLLAPYTFLVLSKAPKRTDSSPFAVLQLAPIDSVD 180

Query: 169 QMEKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRELSEF-PL 227
            +++   +L+ +Y+EV + L   G K +L+ +PA   ++    W L+  +Y +L+    +
Sbjct: 181 VLQQYASALIPLYREVLKSLASAGAKVVLMEDPALTKEMTDEEWRLVTEIYHQLAGILDI 240

Query: 228 TVFTYYDSVSDYEACVSLPVKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQPWK 287
            V TYYDSVS+YE  V LPVK L  D VSN ENL+N++K GFP+DK L+AG++NGRQ W+
Sbjct: 241 YVLTYYDSVSNYERFVQLPVKGLGLDLVSNVENLENIKKLGFPQDKVLIAGILNGRQVWR 300

Query: 288 VDLRKVASLVEKLGASA----ISNSCPLFHLPVTLELENNLPGGLKEKLAFAKEKLEELK 343
            ++ + A LVE L        ISNSCPLFHLP+++E E+ LP GLKE+LAFA+EKL+ELK
Sbjct: 301 ANIEQKARLVEDLSKECRELVISNSCPLFHLPISVEPEDQLPEGLKERLAFAREKLQELK 360

Query: 344 MLKDFLEGKTFDLPNVS--FEDFAVDL----QAVERVRNLPEDSFRREKEYTERDRIQRE 397
           ++K  +EG    L   S   +  A D+       ERVR+L E+ FRR   Y ER ++Q++
Sbjct: 361 LIKGLIEGDRQALEEASRISKILATDIGRRDHVRERVRSLKEEDFRRSVPYRERIKLQQD 420

Query: 398 RLNLPLFPTTTIGSFPQTPEVRKMRSKYRKGEISKEEYEAFIKEQIKKAIELQEEIGLDV 457
            LNLPL PTTTIGSFPQT EVRKMR+ YR G I++EEY+AFIK+QI+  I++QEEIGLDV
Sbjct: 421 ILNLPLLPTTTIGSFPQTEEVRKMRTAYRNGRITQEEYKAFIKKQIEHVIKVQEEIGLDV 480

Query: 458 LVHGEFERTDMVEFFAEKLNGIATTQNGWVLSYGSRCYRPPIIYGTVTRPEPMTLKEITY 517
           LVHGEFERTDMVEFFAEKL GIATT++GWVLSYGSR YRPPIIYG V R  PMTL+EI+Y
Sbjct: 481 LVHGEFERTDMVEFFAEKLEGIATTKHGWVLSYGSRVYRPPIIYGDVERTHPMTLEEISY 540

Query: 518 AQSLTEKPVKGMLTGPVTIMSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQID 577
           AQSLT KPVKGMLTGPVTI++WSYYRED+P+ EIAYQIALA+ +EV+DLE+AGIK++QID
Sbjct: 541 AQSLTSKPVKGMLTGPVTILNWSYYREDVPKHEIAYQIALALLDEVRDLEKAGIKVIQID 600

Query: 578 EPAFREKAPIKKSKWPEYFEWAINAFNLAANARPETQIHAHMCYSDFNEIIEYIHQLEFD 637
           EPAFRE APIK+  W +YF+WAI AF L +NA+P+TQIH HMCYS+FNE+IEYI+Q++FD
Sbjct: 601 EPAFREGAPIKRRDWEKYFDWAIKAFRLCSNAQPQTQIHTHMCYSEFNEVIEYIYQMDFD 660

Query: 638 VISIEASRSKGEIISAFENFKGWIKQIGVGVWDIHSPAVPSINEMREIVERVLRVLPKEL 697
           VISIEASRSKGEII+AFENFKGW +QIG+GV+DIHSPA+P   E++ I+ER ++V+P EL
Sbjct: 661 VISIEASRSKGEIIAAFENFKGWDRQIGIGVYDIHSPAIPEKEEIKRILERAMKVIPVEL 720

Query: 698 IWINPDCGLKTRNWDEVIPSLRNMVALAKEMR 729
           +W+NPDCGLKTRNW+EVIPSLRNMV  A+E+R
Sbjct: 721 LWVNPDCGLKTRNWEEVIPSLRNMVDAARELR 752


Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1748
Number of extensions: 83
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 760
Length adjustment: 40
Effective length of query: 694
Effective length of database: 720
Effective search space:   499680
Effective search space used:   499680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Align candidate WP_012992509.1 THAL_RS07485 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase)
to HMM TIGR01371 (metE: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC 2.1.1.14))

Software error:

../bin/blast/fastacmd -i /tmp/list.21717.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21717.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.