Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_013010714.1 DACET_RS07150 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000025725.1:WP_013010714.1
Length = 1073
Score = 1248 bits (3230), Expect = 0.0
Identities = 643/1079 (59%), Positives = 810/1079 (75%), Gaps = 12/1079 (1%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKR D+KSI+I+G+GPIVIGQACEFDYSG QA KAL+EEGYRVIL+NSNPATIMTDPE+
Sbjct: 1 MPKREDLKSIMIIGSGPIVIGQACEFDYSGTQAVKALKEEGYRVILINSNPATIMTDPEI 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEP+ E+ KI+EKERPDA+LPT+GGQTALN A E+ G+LE++ V +IGA
Sbjct: 61 ADATYIEPLTVEMAEKILEKERPDAILPTVGGQTALNLAKEINDAGLLEKYNVELIGAKI 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AIDKAEDR F AM KIGL S + +T ++AL ++GFP IIRPSFT+GG+GG
Sbjct: 121 EAIDKAEDRELFKQAMTKIGLHLPASAVCNTYQDALDCIDEIGFPAIIRPSFTLGGTGGN 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
+AYN EE++E GL+ SP E+L+++S++GWKEYE+EV+RD NDN +I+CSIEN DAM
Sbjct: 181 VAYNMEEYKEYVEWGLEASPVTEILVEKSVLGWKEYELEVMRDLNDNVVIICSIENVDAM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTDKEYQ +RNA++ V+REIGV+TGGSNVQFAVNP NG I+IEM
Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQELRNAAIKVIREIGVDTGGSNVQFAVNPANGDQIIIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAK+AAKLAVGYTLDEL NDIT +TPASFEP+IDY VTK P
Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELKNDITL-KTPASFEPTIDYCVTKWP 359
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVS---LDD 417
RF FEKF GA+D LTTQMKSVGE MAIGRT +ESLQKA+ LE+G GFDP + L
Sbjct: 360 RFTFEKFPGADDTLTTQMKSVGEAMAIGRTFKESLQKAISSLEIGKCGFDPVFTDEELKT 419
Query: 418 PEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVA 477
+A +IR L+ A+R+WY+A+AFR G S++ V +L ID WFL I++++ E ++
Sbjct: 420 EKAQDEIRALLRRPTAERMWYVAEAFRLGWSIEEVHSLCFIDPWFLHNIKQIIDFEAELQ 479
Query: 478 EVGITGLNADFLRQLKRKGFADARLAKLAGVREAEI-RKLRDQYDLHPVYKRVDTCAAEF 536
+ I ++ ++ K GF+D RLA L G E ++ K + + VYKRVDTC AEF
Sbjct: 480 TLTIMTIDEAVFKKAKEYGFSDKRLAALLGCSELDVWEKTKGKV----VYKRVDTCGAEF 535
Query: 537 ATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYET 596
+ T Y+YSTYE+ECEA P TDR+KIM+LGGGPNRIGQGIEFDYCCVHAS AL E G+ET
Sbjct: 536 ESFTPYLYSTYEKECEAEP-TDRKKIMILGGGPNRIGQGIEFDYCCVHASFALEEMGFET 594
Query: 597 IMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEA 656
IMVNCNPETVSTDYDTSDRLYFEP+T E VL IV+ E P GVIVQ+GGQTPLKLA LE
Sbjct: 595 IMVNCNPETVSTDYDTSDRLYFEPLTREHVLNIVQKENPDGVIVQFGGQTPLKLAVPLER 654
Query: 657 AGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRP 716
AGVP++GTSPD+ID AEDRERF+ +E+L + QPAN A + A + A +IGYP+VVRP
Sbjct: 655 AGVPILGTSPDSIDCAEDRERFKALMEKLDIMQPANGIAKAADEAYKIADQIGYPVVVRP 714
Query: 717 SYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIG 776
SYVLGGRAMEIVYD L Y AV S D PVL+D +L A EVDVD+I DGE +IG
Sbjct: 715 SYVLGGRAMEIVYDRESLENYMVYAVKASEDHPVLIDKYLLHATEVDVDSISDGETCVIG 774
Query: 777 GIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNE 836
IM+HIE+AGVHSGDSACS+P T++ ++ + + +++A EL V GLMN+Q+A+K+++
Sbjct: 775 SIMQHIEEAGVHSGDSACSIPTRTINDAVKAELMTKTKQIAKELNVVGLMNIQYAIKDDQ 834
Query: 837 VYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLP 896
+Y++EVNPRA+RT+PFVSK+ GVPLAK+AA+VMAG L + G TKEV Y++VKE V P
Sbjct: 835 IYMLEVNPRASRTIPFVSKSIGVPLAKMAAKVMAGAKLKDLGFTKEVEINYHTVKESVFP 894
Query: 897 FNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKER 956
F KFPG D +LGPEM+STGEVMG+ + A KAQL + + + K G +SV + K
Sbjct: 895 FVKFPGTDIVLGPEMKSTGEVMGIDYDYGAAQYKAQLAAGNKLPKQGLVFISVNDAVKPD 954
Query: 957 VVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEG-RPHIQDRIKNGEYTYIIN 1015
++ +A L GF + +T GT L E G V KVHEG RP++ D+IKNG+ ++IN
Sbjct: 955 ILKIAKDLQALGFGIISTSGTYNYLTENGFEVEKVAKVHEGVRPNVVDKIKNGKIAFVIN 1014
Query: 1016 TTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVIS-VQEMHAQIK 1073
G+++ DS IRR L Y V Y T++ A+ +A+ A ++ +QE + + K
Sbjct: 1015 IPEGKKSRLDSESIRRVMLSYSVPYVTSVEAASASVIAIKASQKGVTVTPLQEFYTRGK 1073
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3040
Number of extensions: 136
Number of successful extensions: 16
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1073
Length adjustment: 45
Effective length of query: 1028
Effective length of database: 1028
Effective search space: 1056784
Effective search space used: 1056784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_013010714.1 DACET_RS07150 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.15212.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15212.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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