Alignments for a candidate for leuB in Kyrpidia tusciae DSM 2912

Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate WP_013074980.1 BTUS_RS04785 3-isopropylmalate dehydrogenase

Query= SwissProt::P12010
         (366 letters)



>NCBI__GCF_000092905.1:WP_013074980.1
          Length = 360

 Score =  405 bits (1042), Expect = e-118
 Identities = 211/352 (59%), Positives = 255/352 (72%), Gaps = 1/352 (0%)

Query: 4   KLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDIC 63
           +LA+LPGDGIGPEV+ A  R+++ V    GHE +FE   IGGAAI+  G PLPE TL   
Sbjct: 7   RLALLPGDGIGPEVVQAGRRLIEAVAGALGHEVIFEEHAIGGAAIEAFGEPLPEGTLKAA 66

Query: 64  RRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRE 123
           R +DA+LLGAVGGPKWD    + RPE GLLG+RK +G++ANLRPV+AY  LL +SPL+RE
Sbjct: 67  READAVLLGAVGGPKWDRLGGNRRPEAGLLGIRKALGVYANLRPVRAYTPLLGSSPLRRE 126

Query: 124 RVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQIRRK 183
           +VE VDL+IVRELTGGLYFG        G   VVD L YT  EIERI+  AF  A+   K
Sbjct: 127 KVEGVDLLIVRELTGGLYFGPKRREPIDGGTRVVDELVYTTPEIERIVRLAFDAARKAGK 186

Query: 184 KLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENM 243
            L SVDKANVLESSR WRE+ E  A  YPDV   HMLVD+ +MQL+ +P QF +IVTENM
Sbjct: 187 GLTSVDKANVLESSRHWREVVERVATDYPDVPFGHMLVDNCAMQLVRSPNQFGIIVTENM 246

Query: 244 FGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALM 303
           FGDILSDEA+V+TGS+GMLPSASL  D  G+YEPVHGSAPDIAGQG ANPLGT+LS  LM
Sbjct: 247 FGDILSDEAAVLTGSIGMLPSASL-GDGPGLYEPVHGSAPDIAGQGLANPLGTLLSVGLM 305

Query: 304 LRYSFGLEKEAAAIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKL 355
            R+S    +   AI +AV+ VL +GY T DL     ++  T E+TD ++E+L
Sbjct: 306 YRFSLNEPRAEEAIVRAVNRVLAEGYRTADLAGPGDRISRTEEITDAVLERL 357


Lambda     K      H
   0.316    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 497
Number of extensions: 23
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 360
Length adjustment: 29
Effective length of query: 337
Effective length of database: 331
Effective search space:   111547
Effective search space used:   111547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_013074980.1 BTUS_RS04785 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.14730.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14730.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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