Alignments for a candidate for carA in Kyrpidia tusciae DSM 2912

Align Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_013075349.1 BTUS_RS06655 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P25993
         (364 letters)



>NCBI__GCF_000092905.1:WP_013075349.1
          Length = 374

 Score =  406 bits (1044), Expect = e-118
 Identities = 199/355 (56%), Positives = 255/355 (71%), Gaps = 5/355 (1%)

Query: 5   LVLENGAVFEGEAFGSLEHNMGEVVFNTGMTGYQEILSDPSYCGQIVTLTYPLIGNYGIN 64
           L+LE+G  FEG+ FG+   ++GEVVF TGMTGYQE L+DPSY  QIVT TYPL+GNYG+ 
Sbjct: 10  LLLEDGTAFEGKGFGAAAVSVGEVVFTTGMTGYQETLTDPSYYRQIVTFTYPLVGNYGLA 69

Query: 65  RDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMIRTAG 124
               +S      G++++E    PS+ RS  TLDEYL+   +PG++GIDTR L R IR  G
Sbjct: 70  PGVDQSWQVRAFGVVVREAAPTPSHRRSVETLDEYLRRHGVPGIEGIDTRSLVRHIRREG 129

Query: 125 ALKGTFASSDEDI----EAVLKRLNETELPRNQVSQVSAKTAYPSPGRGKRIVLVDFGMK 180
            +KG   S+        +A L    E  +PR+ V+QV+A+  Y  PG+GKR+VLVD+G+K
Sbjct: 130 TMKGALVSTGPGEGLPDKAALWAHLEQPIPRDHVAQVTARAPYRMPGQGKRVVLVDYGLK 189

Query: 181 HGILRELNKRKCDVIVVPYNITAEEVLQLKPDGIMLSNGPGDPKDVPEAIEMIKGVLGKV 240
           HG+L  L  R CD+ VVP    A E+L L+P G++LSNGPGDP+D+PEA E ++ +LG+V
Sbjct: 190 HGMLESLRHRNCDIYVVPAWTPASEILALRPQGVVLSNGPGDPQDIPEAAETVRELLGRV 249

Query: 241 PLFGICLGHQLFALACGANTEKMKFGHRGSNHPVKELATGKVALTSQNHGYTVSSISKTE 300
           PLFGICLGHQ+FALACG  TEKM FGHRG NHPVK+L TG+V +TSQNHGY VS     E
Sbjct: 250 PLFGICLGHQVFALACGGRTEKMSFGHRGCNHPVKDLTTGRVMITSQNHGYVVSREGLPE 309

Query: 301 -LEVTHIAINDDTIEGLKHKTLPAFTVQYHPEASPGPEDANHLFDRFIEMIETTE 354
            LEVTH+  ND T+EGL+H+ LPAF+VQ+HPEA PGP+DA  LFDRF+E I+  E
Sbjct: 310 DLEVTHLNQNDGTVEGLRHRHLPAFSVQFHPEARPGPDDAAELFDRFLEEIDNAE 364


Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 480
Number of extensions: 19
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 374
Length adjustment: 30
Effective length of query: 334
Effective length of database: 344
Effective search space:   114896
Effective search space used:   114896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_013075349.1 BTUS_RS06655 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.8764.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8764.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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