Alignments for a candidate for trpD_2 in Kyrpidia tusciae DSM 2912

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_013075710.1 BTUS_RS08545 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>NCBI__GCF_000092905.1:WP_013075710.1
          Length = 354

 Score =  282 bits (722), Expect = 8e-81
 Identities = 155/335 (46%), Positives = 213/335 (63%), Gaps = 2/335 (0%)

Query: 6   QQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMR 65
           +  L++ +   ++   E    M Q+M G+ + A V A LT LR+K E + EI+G A  MR
Sbjct: 2   RDVLEQLLRGEDLSEAEAQAAMEQVMSGKATHAQVGAFLTALRIKGERVEEISGFAKAMR 61

Query: 66  EFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSA 125
           +F++ + V D   ++D  GTGGDG+ TFN+ST A  VAAA GAKVAKHGNRSVSS+SGSA
Sbjct: 62  KFAQPLPV-DGDKVIDTCGTGGDGARTFNVSTAAALVAAAAGAKVAKHGNRSVSSRSGSA 120

Query: 126 DALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL 185
           D L ALG  + L PE+ A  L + G+ F++AP +H AM+     R+E+G RT+FNILGPL
Sbjct: 121 DVLAALGVEVNLSPEEAAQCLEEVGLCFLFAPSYHGAMRHAMAPRKELGFRTVFNILGPL 180

Query: 186 TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWG-RDGMDELSLGAGTLVGELRD 244
           TNPAG+   +MG F  DLV   ARVL  LGA  A VV G  D +DELS+   + V E++D
Sbjct: 181 TNPAGARRQVMGTFAQDLVEKTARVLLRLGANHAWVVHGMEDHLDELSVSGPSFVAEVKD 240

Query: 245 GQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYV 304
           G V  + ++PED G+  S    +   DA E+ A++L VL    G A DIV LNA A L+V
Sbjct: 241 GAVRTFVLNPEDAGLTRSPLSEVAGGDARENAAIILDVLSGKRGGARDIVVLNAAAGLHV 300

Query: 305 AGVADSIADGIVRARQVLADGSARACLDAYVAFTQ 339
           AG+A ++  G+  A+++L +G A+  LD  V  T+
Sbjct: 301 AGIAPTLEAGVTLAQRMLDEGRAKETLDRLVEVTK 335


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 292
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 354
Length adjustment: 29
Effective length of query: 316
Effective length of database: 325
Effective search space:   102700
Effective search space used:   102700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_013075710.1 BTUS_RS08545 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.24755.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24755.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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