Alignments for a candidate for carA in Kyrpidia tusciae DSM 2912

Align Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_013076162.1 BTUS_RS11070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P25993
         (364 letters)



>NCBI__GCF_000092905.1:WP_013076162.1
          Length = 383

 Score =  357 bits (915), Expect = e-103
 Identities = 189/381 (49%), Positives = 246/381 (64%), Gaps = 25/381 (6%)

Query: 1   MKRRLVLENGAVFEGEAFGSLEHNMGEVVFNTGMTGYQEILSDPSYCGQIVTLTYPLIGN 60
           MK  L+LENG VF GE  G  E   GEVVFNTGMTGYQEIL+DPSY GQIVT+TYPLIGN
Sbjct: 1   MKGSLILENGRVFTGEMLGRPERRYGEVVFNTGMTGYQEILTDPSYAGQIVTMTYPLIGN 60

Query: 61  YGINRDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMI 120
           YGIN  DFES  P++ G +  ELCE PS+  S  T+D YL+ + +  L G+DTR L R I
Sbjct: 61  YGINETDFESRKPWLSGFVTAELCERPSHHASRETVDAYLRRQGVAALTGVDTRALVRTI 120

Query: 121 RTAGALKGTFA-----SSDEDIEAVLKR--------------LNETELPRNQVSQVSAKT 161
           R  GA+KG         S+E  ++                  L+  +LPR+ V +V+   
Sbjct: 121 REQGAMKGWIVPEADRGSNEGAKSGAAAGGDPGVPYSDPGAGLDFPDLPRDWVRRVTVPE 180

Query: 162 AYPSPGRGK-RIVLVDFGMKHGILRELNKRKCDVIVVPYNITAEEVLQLKPDGIMLSNGP 220
           AY +   G   +V++D G K  I+  L +  C V V P   T +++  L+PDG++LSNGP
Sbjct: 181 AYTAAPTGLFHVVVMDLGAKGHIVDSLAQLGCRVTVAPAFYTFDQIAALEPDGVVLSNGP 240

Query: 221 GDPKDVPEAIEMIKGVLGKVPLFGICLGHQLFALACGANTEKMKFGHRGSNHPVKELATG 280
           GDP+DVPE     + V  + P FGICLGHQ+  LA GA  EK+KFGHRGSNHPVK+L +G
Sbjct: 241 GDPRDVPEVAREARRVAERWPTFGICLGHQILGLAFGAKVEKLKFGHRGSNHPVKDLRSG 300

Query: 281 KVALTSQNHGYTVSSIS-KTELEVTHIAINDDTIEGLKHKTLPAFTVQYHPEASPGPEDA 339
           +V +T QNHGYT++      +LEVTH  +ND T+EGL+H+ LP F+VQYHPEA PGP D+
Sbjct: 301 RVWITPQNHGYTLAEDGWPDDLEVTHRHVNDGTVEGLRHRRLPVFSVQYHPEAHPGPADS 360

Query: 340 NHLFDRFIEMIETTEKEGEAV 360
            +LF++FI ++E    EG+ V
Sbjct: 361 FYLFEQFIALME----EGKGV 377


Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 450
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 383
Length adjustment: 30
Effective length of query: 334
Effective length of database: 353
Effective search space:   117902
Effective search space used:   117902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013076162.1 BTUS_RS11070 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.10451.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10451.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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