Alignments for a candidate for asp-kinase in Paraburkholderia atlantica CCGE1002

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_013089748.1 BC1002_RS09065 aspartate kinase

Query= SwissProt::A4VJB4
         (412 letters)



>NCBI__GCF_000092885.1:WP_013089748.1
          Length = 416

 Score =  516 bits (1329), Expect = e-151
 Identities = 264/414 (63%), Positives = 334/414 (80%), Gaps = 10/414 (2%)

Query: 1   MALIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQ 60
           MALIV K+GGTS+G+VERI+ VA++V K+   G  +VVV SAMSGETNRL+ LAK+I+ Q
Sbjct: 1   MALIVHKYGGTSMGSVERIKNVAKRVAKWHKAGHQMVVVPSAMSGETNRLLGLAKEITTQ 60

Query: 61  PVPRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQR 120
           P PRELD++ +TGEQV+  LLA+AL + GV AVSY G QV + TDSA TKARI  ID +R
Sbjct: 61  PSPRELDMIAATGEQVSSGLLAIALQEAGVEAVSYAGWQVPVRTDSAFTKARISDIDGER 120

Query: 121 IQRDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           +++D+ AGRVVV+ GFQG+D  G+ITTLGRGGSDT+ VA+AAALKADEC IYTDVDGVYT
Sbjct: 121 VKQDLAAGRVVVITGFQGIDPDGHITTLGRGGSDTSAVAVAAALKADECLIYTDVDGVYT 180

Query: 181 TDPRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQE------ 234
           TDPRVV +A+RLD++TFEEMLEMASLGSKVLQIR+VEFAGKY V  RVL S  +      
Sbjct: 181 TDPRVVEEARRLDRVTFEEMLEMASLGSKVLQIRSVEFAGKYQVKTRVLSSLTDPLMPLD 240

Query: 235 ---GPGTLITLDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEV 291
                GTLIT +E+E+ME+ +ISGIAF RDEA++ + GVPD PG+A++ILGP++ AN++V
Sbjct: 241 DEMKSGTLITFEEDETMEKAVISGIAFQRDEARIAVMGVPDKPGIAYQILGPVADANIDV 300

Query: 292 DMIVQNVAHDNTTDFTFTVHRNDYNNALQVLQG-IAAEMGAREAIGDTNIAKVSIVGVGM 350
           DMI+QN + +  T FTFTV R DY  A+++L G + A + A + +GD  ++KVS+VGVGM
Sbjct: 301 DMIIQNQSVEGKTAFTFTVGRGDYARAMEILTGTVKAHVQAEQVLGDPKVSKVSVVGVGM 360

Query: 351 RSHAGVASRMFEALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 404
           RSH G+AS+MF  L++E INIQMISTSEIK+SV+I+EKY+ELAVRALH AFELD
Sbjct: 361 RSHVGIASKMFRTLSEEGINIQMISTSEIKISVLIDEKYMELAVRALHKAFELD 414


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 518
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 416
Length adjustment: 31
Effective length of query: 381
Effective length of database: 385
Effective search space:   146685
Effective search space used:   146685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013089748.1 BC1002_RS09065 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.7583.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7583.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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