Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_013090429.1 BC1002_RS12695 branched-chain amino acid transaminase
Query= reanno::BFirm:BPHYT_RS16285
(307 letters)
>NCBI__GCF_000092885.1:WP_013090429.1
Length = 307
Score = 598 bits (1542), Expect = e-176
Identities = 293/307 (95%), Positives = 299/307 (97%)
Query: 1 MSMADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHT 60
MSMADRDGKIWMDGKLI+WRDAKIHVLTHTLHYGMGVFEGVRAYKTADG TAIFRLQEHT
Sbjct: 1 MSMADRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGATAIFRLQEHT 60
Query: 61 KRLLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIH 120
KRLLNSAKIFQMDVPFDHETLAAAQ EVVRENKL+SCYLRPIIWVGSEKLGVSAKGNTIH
Sbjct: 61 KRLLNSAKIFQMDVPFDHETLAAAQREVVRENKLDSCYLRPIIWVGSEKLGVSAKGNTIH 120
Query: 121 VAIAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG 180
VAIAAWPWGAYLGEDGI KGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG
Sbjct: 121 VAIAAWPWGAYLGEDGITKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG 180
Query: 181 YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEK 240
YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARD GIQVIEK
Sbjct: 181 YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDMGIQVIEK 240
Query: 241 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKY 300
RITRDEVYTCDEAFFTGTAAEVTPIRELDNR IG+G RGPITEKLQS FFD+VNGK +KY
Sbjct: 241 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRKIGAGVRGPITEKLQSAFFDVVNGKGEKY 300
Query: 301 ANWLTKI 307
A+WLTKI
Sbjct: 301 AHWLTKI 307
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 537
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 307
Length adjustment: 27
Effective length of query: 280
Effective length of database: 280
Effective search space: 78400
Effective search space used: 78400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)
Align candidate WP_013090429.1 BC1002_RS12695 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.3526.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3526.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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