Alignments for a candidate for ilvA in Arcobacter nitrofigilis DSM 7299

Align L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 (characterized)
to candidate WP_013134325.1 ARNIT_RS02585 threonine ammonia-lyase

Query= SwissProt::Q9WYJ1
         (401 letters)



>NCBI__GCF_000092245.1:WP_013134325.1
          Length = 401

 Score =  364 bits (935), Expect = e-105
 Identities = 197/407 (48%), Positives = 270/407 (66%), Gaps = 17/407 (4%)

Query: 1   MITLEDIKEAQRTLKNVVHRTALAYSSVLSEVTGGEIYLKMENLQKTGSFKIRGAYNKIA 60
           MITL+DIK+A+  L+ ++ +T L Y+  LSE     ++LK ENLQ TGSFKIRGA+NK+A
Sbjct: 1   MITLKDIKDAKEKLEGIILKTPLTYAPFLSEELNSNVFLKKENLQLTGSFKIRGAFNKVA 60

Query: 61  HLSEEERKRGVVAASAGNHAQGVALAAQIFGIPATIVMPRYAPLSKITKTRNLGAQVILE 120
            L EE R  G+VAASAGNHAQG+A A   FG  ATI MP   PL+K++  +  GA V+L 
Sbjct: 61  SLDEETRNIGIVAASAGNHAQGIAYAGNYFGCDATIFMPEATPLTKVSGVKQYGANVVLT 120

Query: 121 GNIFDEAYEAALRIQEKTGAVFVHPFNDPHVIAGQGTIGLEIMEDLPDVEVVVVPVGGGG 180
           G  +DEAY AA++  E+    F+H F +  VIAGQGTIGLEI+E + D+EV+V+P+GGGG
Sbjct: 121 GQNYDEAYAAAIKFCEENNKTFIHAFANDKVIAGQGTIGLEIIEQIEDLEVLVIPIGGGG 180

Query: 181 LISGVSVAIKSMNPEVKVIGVQTENMPSMIASLRRGRAERVEGK--------PTLADGIA 232
           LI+G +VA KS+NP +K+IGV        +AS  RG  +  E +         T+ADGIA
Sbjct: 181 LIAGAAVAAKSINPNIKIIGV--------VASGARGMKDSFEARLPIDSTSVKTIADGIA 232

Query: 233 VKKPGDLTFELVKKYVDEMVAVNEEEIADAILFLLEQAKVVAEGAGAVGVAAVLNK-LDV 291
           VK       E   +YVDE+V V E EIA+AILFLLE+ K+V EGAGAV VAA+++K +D+
Sbjct: 233 VKVVTPKLLEYALEYVDEVVEVEEHEIANAILFLLEKHKLVVEGAGAVSVAALMHKRIDI 292

Query: 292 KGKKVAIVISGGNIDVNMIDRIINKGLVKSGRKVFIETFVMDRPGALKELLGIVAELGAN 351
           +  KV  +ISGGNIDV M+ +II KGLVKS RK+ +   ++D+PG+L  L  I     AN
Sbjct: 293 ENSKVCAIISGGNIDVTMLSQIIEKGLVKSYRKMNLMVTLIDKPGSLMHLTSIFQSSDAN 352

Query: 352 VLSVFHNRSAKEVPIGFAKIELELETVDEKHVEEIERVLIAKGYEVR 398
           ++ + ++RS+ ++  G A + + LET  E+H + I   L   GY  +
Sbjct: 353 IVQIDYDRSSIKLEFGEAYLTVSLETKGEEHQKVIRENLKQNGYRFK 399


Lambda     K      H
   0.317    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 371
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 401
Length adjustment: 31
Effective length of query: 370
Effective length of database: 370
Effective search space:   136900
Effective search space used:   136900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013134325.1 ARNIT_RS02585 (threonine ammonia-lyase)
to HMM TIGR01127 (ilvA: threonine ammonia-lyase (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.26671.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26671.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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